Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc95g00011 ATGGGGACCAAACGAGTGTTGAAATGGGATTGGTGGGTGAAACAACGTGATCAGAGGAGTTGGACAAAAGAGAAATTTAGAGGGTTGGAAGAGGCTTCTTTCTCTATTTTTGTGGATAATTTACCGGATTCCATATCTAAGAAGGAATTGTTTCACTTGTTTAGCTGGTATGGTATGATTAAAGACATTTACCTATCCATGAAGATGAAAGGAGGAAATCTGCATTTGTTTGCGTTCATAAGATATATAACAAAGAGTGGTGTGTTGAAGGCTATAGCAGAGATGAATCATATGAATCTTAATGGGAGAAAATTATTCGTAGGTAATGCTAGGAATAGGAGAGATAACAAAACCCTTGAGGTTAATGCAAGCCCAAGAAATGTAGCGGAGACAGATATAGAGTTTGTGAATGGAAGGGAGTTTGATTCGGCGGCAGAATTAGTGTTTTTGGAATGTGTTGAGTCTGAACAGGAGGTTGTGAAAAGAGATATAGTACAAGACGTTTTGGATGAGTGGAGTTTTTCCTTTTTCAATCGAAGGGGAGCGTTTAATGTGTTGAAGGATCATTGGCAAAATTGGTGGTGA 585 0.3863 MGTKRVLKWDWWVKQRDQRSWTKEKFRGLEEASFSIFVDNLPDSISKKELFHLFSWYGMIKDIYLSMKMKGGNLHLFAFIRYITKSGVLKAIAEMNHMNLNGRKLFVGNARNRRDNKTLEVNASPRNVAETDIEFVNGREFDSAAELVFLECVESEQEVVKRDIVQDVLDEWSFSFFNRRGAFNVLKDHWQNWW 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc95g00011 194 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Stsc95g00011 194 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 27 122 - -
Stsc95g00011 194 SMART rrm1_1 35 108 IPR000504 GO:0003723
Stsc95g00011 194 CDD RRM_SF 36 107 - -
Stsc95g00011 194 SUPERFAMILY RNA-binding domain, RBD 22 115 IPR035979 GO:0003676
Stsc95g00011 194 Gene3D - 12 141 IPR012677 -
Stsc95g00011 194 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 105 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc95g00011 Stsc-Chr95 85072 85656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc95g00011 35 131 Eukaryotic Initiation Factors Gene Family AT4G34110 33.333 1.62e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc95g00011 - K13126 adu:107464312 126.331