Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc954g00006 ATGGCAAATAAGTTCAGCAACAGCTTGAATGACATTAATGAAAGATCAGAGAAGGAATCATGCATTGAGAAATCGGACAAACACATTGTTCAGAGTCCTTTGGACAGAGTTGGCAACTCAAGGGCTCAATTTGAAGACCTCCCAGAAGAAGATCCTGAGGAGGAATTGTGTGAGGAGCCAGAGGAAGATCCAGAGGAGGAATCAGCTGAGGAAGATGTACAGGAGGAAGATCCCGAGGAGGAATCAGCTGAGGAACTAGAGGAAGATCCAGATGAGGAATCAGCTGAAGAAGATCCAGAGGAGGAATTAGCCGAGGAACTGGAGGAAAATCCAGAGGAGGAATCTGCTGAGGAAGATCCAGAGGAGGAATTAGCCGAGGAACTGGAGGAAGATCCAGAGGAGGAATCTGCTGAGGAAGATCCAGAGGAGGAATTAGTTGAGGAAGTAGAGGAAGATGTACAGGAGGAACCAGCCAAGGAACAGGAGGAAGATCCCCTGGAGGAATCAGCTGAGGAATTGGAGGAAGATATACAGGAAGAATCAACTGAGGAACTAGAGGAAGATCCAGAGGAAGAACCATCTGAGGAACTAGAGGAAGATCCTGAAGAGGATCCAGTAGCAAACATCAAGTGGGAGGGTGCATCATATAATGAAGTTCCATCATTATCTAAGGCATCGTATCAATCACAGGAGAAATGCAAGCAGGACGAGATGCAAAGCCAAAATTTAGAACCAGAAGCTTCACGACTTGAACTCAGTAATGATGAGTCGATTTCTGTAGCAACCACTGATAAAGTTGGTTCCAAAGAAGAAGTTTCAGGAAGGTCTGCTAAACAAAGGCGCAGTAGATGGGAACCACAACCTTGTGGAGATGGAATGAATGATGATCAAACTTGCAAAAGGAGGAAAACCAGGTGGTCTAGTGAAGAAACTCAAATGAAAATGCTGGGTCCACTTCAGCTACGTAACTTAACTGTGAATTTTGCTACTACATCTGATAAGAATCCACAAATTCAGGGACTGAAAGTTGAGCTCTTGGAGATTACCAAAAAGAGCAAGCCCCCAAAGCTCTTCAAAAAGCTTTACATACCAGTGAAAGAATATCCAGAGTACAATTTCATTGGGCTTATTATTGGTCCTCGTGGAAACACACAGAAGAAGATGGAAAAAGAATCTGGGGCTACGATCCTTCTAAGAGGTAAAGGCTCCACAAAAGCAAGTAGCAAATGTGACTCTGAGAAAGAAGATTTACATGTTTTAATAGAAGCTGACAACCAAAAATCACTGGATGCAGCAGTTGGCATGGTTGAAAAACTGTTAGTTCCAGTTGAAGAAGAACGAAATGAGCACAAGCGTGAACAATTGAAGGAGCTGGCTCAACTGAAAGCAACACGGAGAGATGAAAATGTGTGCAGTGTGTGTGGTGATAAGGGACACAGACAATATGCATGCCCTAACCTTGAATCAACTTTTAAATTCGATTTATTTGACACTGGTTTTAGCAGCAGCCTTTCAACTGGATCAAGTCTTAATTCAGTGCAGAATAGACAAACAAGGCGAGGAAGGGAAATAAACGACAAAGTCCTCTATGTTGGCTATCTGCCTCAGTCAATTGATGATAATAGATTGACTGAGCTGTTCTCCCCATTTGGTAAGATCACTGAAGCAAACATTGTTAAGGATCGAACCACTGGCATTAGTAAAGGTTACGGCTTTGTCAAATTTGAAGATTCCCAAGATGCAGCTTCAGCTATAACACATCTAAATGGTTTCAAAATTGAAGGGAAGTTTTTGAAAGTGAATATAGCCGGACTGCAGGCAAATTATGGAACCCCAAGTCTAAACCCCATTCCCCAGATCCCAGTGCCTGCAACTGTATCCACAAATGTCACACGCCAAATAAATCATTCTGATCCATTACATTTCATGCTGCCAGAATACCAGTCTTCATTTCATGACACCAGTGGCTCAAATATGTTTCCATGTAATATCAACTCTGAGCATGGTGATCCTATGAAGGCAAATGATTTGCCCTTTACTCCTCCAGGAAACACTTTGATCTCTCCCCATCTCAGTTATTCTGGCAGCTTTTCAGATCAAAGAATGTTCTATGTTCTCATCAAAAATTCGACAGCACATTTTCCTGGTGATCATGGTAATTTCAGTCCTTTCTTATGA 2178 0.4247 MANKFSNSLNDINERSEKESCIEKSDKHIVQSPLDRVGNSRAQFEDLPEEDPEEELCEEPEEDPEEESAEEDVQEEDPEEESAEELEEDPDEESAEEDPEEELAEELEENPEEESAEEDPEEELAEELEEDPEEESAEEDPEEELVEEVEEDVQEEPAKEQEEDPLEESAEELEEDIQEESTEELEEDPEEEPSEELEEDPEEDPVANIKWEGASYNEVPSLSKASYQSQEKCKQDEMQSQNLEPEASRLELSNDESISVATTDKVGSKEEVSGRSAKQRRSRWEPQPCGDGMNDDQTCKRRKTRWSSEETQMKMLGPLQLRNLTVNFATTSDKNPQIQGLKVELLEITKKSKPPKLFKKLYIPVKEYPEYNFIGLIIGPRGNTQKKMEKESGATILLRGKGSTKASSKCDSEKEDLHVLIEADNQKSLDAAVGMVEKLLVPVEEERNEHKREQLKELAQLKATRRDENVCSVCGDKGHRQYACPNLESTFKFDLFDTGFSSSLSTGSSLNSVQNRQTRRGREINDKVLYVGYLPQSIDDNRLTELFSPFGKITEANIVKDRTTGISKGYGFVKFEDSQDAASAITHLNGFKIEGKFLKVNIAGLQANYGTPSLNPIPQIPVPATVSTNVTRQINHSDPLHFMLPEYQSSFHDTSGSNMFPCNINSEHGDPMKANDLPFTPPGNTLISPHLSYSGSFSDQRMFYVLIKNSTAHFPGDHGNFSPFL 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc954g00006 725 MobiDBLite consensus disorder prediction 11 31 - -
Stsc954g00006 725 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 357 474 IPR036612 GO:0003723
Stsc954g00006 725 SMART rrm1_1 528 601 IPR000504 GO:0003723
Stsc954g00006 725 MobiDBLite consensus disorder prediction 1 305 - -
Stsc954g00006 725 MobiDBLite consensus disorder prediction 47 205 - -
Stsc954g00006 725 FunFam Sex lethal, isoform D 505 604 - -
Stsc954g00006 725 MobiDBLite consensus disorder prediction 219 266 - -
Stsc954g00006 725 SMART kh_6 357 441 IPR004087 GO:0003676
Stsc954g00006 725 Gene3D - 505 608 IPR012677 -
Stsc954g00006 725 Coils Coil 163 183 - -
Stsc954g00006 725 SUPERFAMILY RNA-binding domain, RBD 521 603 IPR035979 GO:0003676
Stsc954g00006 725 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 529 599 IPR000504 GO:0003723
Stsc954g00006 725 PANTHER RNA-BINDING PROTEIN RELATED 230 606 IPR045071 -
Stsc954g00006 725 CDD KH-I_BBP 356 441 - -
Stsc954g00006 725 Gene3D K Homology domain, type 1 268 472 IPR036612 GO:0003723
Stsc954g00006 725 MobiDBLite consensus disorder prediction 268 285 - -
Stsc954g00006 725 ProSiteProfiles Type-1 KH domain profile. 372 436 - -
Stsc954g00006 725 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 527 605 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc954g00006 Stsc-Chr954 14906 17205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc954g00006 458 603 Eukaryotic Initiation Factors Gene Family AT3G11400 31.176 1.19e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc954g00006 K13095 - pcin:129306904 382.104