Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc954g00003 ATGGCACAGTCCCCGGTACAGCCAGTGCAGCCACTTTCCTCCAACGAACACACTTGGGACCCTTCAATCGCCTTCGTCCTCGGTAGCTTCTTATTCGTGGCGGCCTTCTTAGCCTTCCTCCGCCGCTGTGGAGAGCTACTCCTTGGTCAACAATACAGCAACAATAATACCACACAGTTGCCCTGTTCCTGCTGCAACACTGGCATCAACCCCGACATCCTCGAAACCTTCCCCATCGTCTTCTATTCCAGCATCAAGGACCTCAGAATCCGCGCAGAGGGTCCGCTAGAGTGCGCCGTCTGCCTCACCGAGTTCACCGGCAACGACACACTTCGTTTGCTGCCGCATTGTAACCACGTCTTCCATCCTCCCTGCATCGACGCCTGGCTCTCCTCCCACGTCACGTGCCCCGTTTGCCGCGCCAATCTCAACCAAGATCCCTCCCAAGTCGCGGTTTCGTTGAGCATCGGCGGAGAAGAACATGAAGAAGAGGATTCTGGAAACAGAGCAGAAGAAGAGAACGTGGGTGGTGAGAGCATAATTGAGGGGCAGGGGAAGAAAGCGAAGGGACGGATCCTGAAAAGGTGGAACACGACGGGGCACTCGGTGGTGGAGGGAGGAGAGTGTGTGGAGAGGTATACGCTGAGATTGCCGGAGGATGTGAGGAGGTACATTATGGTGAACCATGGGGTGATGATGATGCAGCGTTCTGCCAGCTACAACGCGGCGGAGGGTTCGAAGAAAGGGTTGTGTTGGAGTGAGACGGAAGGAGGTAGCAGCAGAGGAGGTAAGAAGAGTAACAGCTCTGTTAGAGGCAAGCCTAGAATATGGAACAATCAACCCTAG 846 0.552 MAQSPVQPVQPLSSNEHTWDPSIAFVLGSFLFVAAFLAFLRRCGELLLGQQYSNNNTTQLPCSCCNTGINPDILETFPIVFYSSIKDLRIRAEGPLECAVCLTEFTGNDTLRLLPHCNHVFHPPCIDAWLSSHVTCPVCRANLNQDPSQVAVSLSIGGEEHEEEDSGNRAEEENVGGESIIEGQGKKAKGRILKRWNTTGHSVVEGGECVERYTLRLPEDVRRYIMVNHGVMMMQRSASYNAAEGSKKGLCWSETEGGSSRGGKKSNSSVRGKPRIWNNQP 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc954g00003 281 Pfam Ring finger domain 97 140 IPR001841 -
Stsc954g00003 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 154 IPR013083 -
Stsc954g00003 281 MobiDBLite consensus disorder prediction 259 281 - -
Stsc954g00003 281 FunFam E3 ubiquitin-protein ligase ATL6 57 146 - -
Stsc954g00003 281 SMART ring_2 98 139 IPR001841 -
Stsc954g00003 281 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Stsc954g00003 281 MobiDBLite consensus disorder prediction 157 176 - -
Stsc954g00003 281 MobiDBLite consensus disorder prediction 156 183 - -
Stsc954g00003 281 SUPERFAMILY RING/U-box 89 147 - -
Stsc954g00003 281 CDD RING-H2_EL5-like 97 140 - -
Stsc954g00003 281 PANTHER RING FINGER DOMAIN-CONTAINING 21 148 - -
Stsc954g00003 281 MobiDBLite consensus disorder prediction 245 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc954g00003 Stsc-Chr954 5484 6457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc954g00003 23 226 Rapid Response to Elicitors AT3G05200 40.455 8.84e-45 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc954g00003 K10664 - gmx:100809056 206.838