Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc95499g00001 GGATTTGAGGTAATGCTTGCTATAGATAAGATTATAAAATTTGATCTTAGTTGGTATATGGGCATACTCGGAGACGGCTTGTTGAGACTGCAGTTCAGAAGTTTGTCGAGGAGGGCTGAGGCTACTGAGGATTTGTCTGAAGCCAAGGAGACAGCCAATAAGGAAGACATCGAAAAATTCAGCAAACGGACTGTGAAGGTGACAAAGCAGCATAATGAAGACTGCAAAAAGCTTTTAAGACTCATGGGAGTGCCCGTCATTGAGGCACCTTCAGAAGCAGAGGCTCAGTGTGCTTCTCTTTGTAAAACTGGAAAGGTTTATGCTGTAGCTTCAGAAGATATGGATTCTTTAACATTTGGAGCTACCAAATTTCTTCGCCATTTAATGGATCCCAGCTCCAAAAAGATTCCAGTGATGGAATTTGACATTGCTAAGGTTTTGGAGGACCTAGAATTGAGCATGGACCAATTTATTGACCTATGCATTCTTTCTGGGTGTGATTACTGTGAAAGCGTCCGAGGGATTGGAGGAACAACAGCTTTGAAGCTCATACGTCAACACGGCTCTATCGAGAAGATTTTGGAGAACTTAAACAAAGAAAGGT 604 0.4222 GFEVMLAIDKIIKFDLSWYMGILGDGLLRLQFRSLSRRAEATEDLSEAKETANKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPSEAEAQCASLCKTGKVYAVASEDMDSLTFGATKFLRHLMDPSSKKIPVMEFDIAKVLEDLELSMDQFIDLCILSGCDYCESVRGIGGTTALKLIRQHGSIEKILENLNKER 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc95499g00001 201 Pfam XPG I-region 83 167 IPR006086 GO:0004518
Stsc95499g00001 201 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 100 120 IPR006084 -
Stsc95499g00001 201 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 79 96 IPR006084 -
Stsc95499g00001 201 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 157 172 IPR006084 -
Stsc95499g00001 201 SMART HhH_4 154 187 IPR008918 GO:0003677|GO:0003824
Stsc95499g00001 201 ProSitePatterns XPG protein signature 2. 83 97 IPR019974 GO:0016788
Stsc95499g00001 201 SMART xpgineu 80 152 IPR006086 GO:0004518
Stsc95499g00001 201 CDD H3TH_FEN1-Euk 155 201 - -
Stsc95499g00001 201 Gene3D - 29 155 - -
Stsc95499g00001 201 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 34 196 IPR006084 -
Stsc95499g00001 201 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 152 199 IPR036279 -
Stsc95499g00001 201 Gene3D - 156 201 - -
Stsc95499g00001 201 FunFam Flap endonuclease 1 152 201 - -
Stsc95499g00001 201 Coils Coil 38 58 - -
Stsc95499g00001 201 SUPERFAMILY PIN domain-like 33 167 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc95499g00001 Stsc-Chr95499 97 1605 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc95499g00001 33 201 Core DNA Replication Machinery Family AT5G26680 81.657 2.58e-101 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc95499g00001 K04799 - gmx:100792878 301.982