Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc94g00022 ATGGAGACACGTTATAGGGATTCCTTGTCCTCCCATGGTGTTGCAGGCTCATCTAAGACTTCTTCACTTAATGTTCCCGAAAAGGTGGGAAGCAGTGCTTGGGGAATACCGCACAAGAGTAATGTATTTCATGCTTCTAATGATGTTAGCTTGTTTTCCAGCTCACTACCTGTTCTTCCACATGAGAAGTTAAATTTGACTGATTCTGAACGTTATGGCCAACCTATTGATGATAACATGCTAACACTAGATAAAGTGGGCAAAGAGAATGAGGAAAATGATCCTTTTGAAGATTTTGAAGCCAATATAGTTGGAAACATACTTCCTGATGATGAAGAGGAGCTTTTAGCTGGGATAATGGATGATTTTGACCTTAGTAGGTTGCCAAGCCAATTGGAGGATTTGGATGATAATGATCTGTTTGGCAGTGGAGGGGGGTTAGAAATGGACTTTGAACCCCAAGAGAGTCTTAATGTTGGCATGTCAAAGCTAAGCATTTCAGATGGAGTTGCTTCAAATGGTATTGGTCATTATTCAATTCCAAATGGTGTGGGGACAGTGGCTGGGGAGCATCCCTATGGGGAGCATCCTTCAAGGACATTATTTGTTCGAAACATCAATAGTAATGTTGAGGACTCTGAATTAAGGAACTTATTTGAGCAATATGGGGATATCAGAACTTTGTACACTGCATGCAAGCATAGAGGCTTTGTGATGATATCTTACTATGACATTCGAGATGCTCGCACTGCAATGCGTGCCTTGCAAAACAAGCCCTTGAAACGAAGAAAACTTGATATTCATTTTTCAATTCCCAAGGATAACCCCTCAGAGAAAGATATTAATCAAGGAACCCTTGTAGCGTTCAATTTGGATCCTTCAGTGTCAAATGAAGACCTTCGATTAATTTTTGGGGCTTATGGAGAGGTCAAGGAGATTAGGGAAACACCTCATAAGAGGCACCACAAATTTATTGAGTTTTATGATGTAAGAGCGGCAGAAGCAGCTCTTAAAGCATTAAATCGAAGGGATATTGCTGGGAAACGCATAAAACTTGAACCTAGTCGCCCTGGCGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAGCTTGAGCAAGATGATGCTCGAAGTTTCAGACATCAAATAGGTTCACCTGTGGCCAATTCTCCTCCCGGTAACTGGCCACATTTTGGTAGTCCAGTTGAGCATAATCAACTAGGTTCGTTTAGCAAGTCACCTGGTTTGGGTCATGCCAGCCCTATGAATACTAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCACATGCATCTAACAAGATTGCGCCGATTGGTAAGGATTCTGTAAGGGCTGCAAATCAGATATTTGTGAACTCTGGATCAATGCAAGGAACAACTTTTCAGCATTCCATGTCTTTCCCTGAGCAAAAAGTGAGTGCAAGTTCTAGGCCTATATCTTCCTTTGGCGGATCAAGTTCAAGCTCTTCAAGTATTGGAACATTGTCTGGCCCTCAATTTCTTTGGGGGAGCCCAACTCCTTACACAGAGCATTCGACCACATCTGGTTGGTCTTCGTCTTCTTTGGGGCATCCATTTACTTCTAGTAGCCAAAGGCAGGGTCTCCCATATACAAGTCATCGCAGTTCTTTTCTTAGTTCCCAGCCCCATCATCATATAGGATCTGCTCCATCTGGCCTTCATTTTGATAGGCATTTTAACTATTTCCAAGAATCACCCGATGCTTCTCTCATGAGCCCAGTTGGATTTGGGAATTTAAATCTCAGTGACAGGAGTTTTATGATGAACAGGAGCAGTCGTGCATCTTTAGGTGTTTCTGCTGGCCTTTCAGGAAATACTGTTGAAAATGGTTCACCTAATTTTGGGATGTTGTCACTGCCAAGACATGGTTCCTTGTTTCTCGGAAGCAGTTCATATTCTGGACCAGGAGCAACCAACACCGAAGGATGGGCTGAACGCGGTCGAAGTAGGCGACCCGAGAATATTGGAAACCCAATTGATTCAAAGAAGCTGTACCAACTTGATCTTGATAAAATCCGCAGTGGGGAAGATACAAGGACGACTTTAATGATTAAAAACATTCCTAACAAGTACACTTCAAAGATGCTGCTTGCTGCAATTGATGAGAGTCACCGGGGTGCTTATGACTTTCTCTACTTGCCAATTGATTTTAAGAACAAGTGTAATGTGGGTTATGCTTTCATCAATATGGTGTCTCCTTCACACATCATTCCATTCTATGAGGCATTTAATGGGAAGAAGTGGGAGAAATTTAATAGCGAAAAAGTTGCTTCACTGGCATATGCAAGGATACAAGGAAAGGCTGCACTTGTGTCACATTTTCAGAATTCAAGCTTAATGAATGAGGATAAGCGGTGTCGGCCAATTCTCTTTCATTCAGAGGGCCAAGAGACTAATGATCAGGAGAATTTTCTATCCAGTAATTTGAACATATGTATTCGTCAACCAGATGGGTCTTACTCAGGTGATTTATTGGAGGAGAGCCCAAAGGGCGATTGGGACTAG 2550 0.4239 METRYRDSLSSHGVAGSSKTSSLNVPEKVGSSAWGIPHKSNVFHASNDVSLFSSSLPVLPHEKLNLTDSERYGQPIDDNMLTLDKVGKENEENDPFEDFEANIVGNILPDDEEELLAGIMDDFDLSRLPSQLEDLDDNDLFGSGGGLEMDFEPQESLNVGMSKLSISDGVASNGIGHYSIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRNLFEQYGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKPLKRRKLDIHFSIPKDNPSEKDINQGTLVAFNLDPSVSNEDLRLIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRRDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDDARSFRHQIGSPVANSPPGNWPHFGSPVEHNQLGSFSKSPGLGHASPMNTNHLSGLAAILSPHASNKIAPIGKDSVRAANQIFVNSGSMQGTTFQHSMSFPEQKVSASSRPISSFGGSSSSSSSIGTLSGPQFLWGSPTPYTEHSTTSGWSSSSLGHPFTSSSQRQGLPYTSHRSSFLSSQPHHHIGSAPSGLHFDRHFNYFQESPDASLMSPVGFGNLNLSDRSFMMNRSSRASLGVSAGLSGNTVENGSPNFGMLSLPRHGSLFLGSSSYSGPGATNTEGWAERGRSRRPENIGNPIDSKKLYQLDLDKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDESHRGAYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKAALVSHFQNSSLMNEDKRCRPILFHSEGQETNDQENFLSSNLNICIRQPDGSYSGDLLEESPKGDWD 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc94g00022 849 CDD RRM1_MEI2_like 198 274 IPR034453 -
Stsc94g00022 849 MobiDBLite consensus disorder prediction 521 565 - -
Stsc94g00022 849 PANTHER RNA RECOGNITION MOTIF-CONTAINING 26 812 - -
Stsc94g00022 849 SMART rrm1_1 200 268 IPR000504 GO:0003723
Stsc94g00022 849 SMART rrm1_1 285 353 IPR000504 GO:0003723
Stsc94g00022 849 SMART rrm1_1 696 772 IPR000504 GO:0003723
Stsc94g00022 849 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 351 IPR000504 GO:0003723
Stsc94g00022 849 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Stsc94g00022 849 Pfam RNA recognition motif 2 694 790 IPR007201 -
Stsc94g00022 849 MobiDBLite consensus disorder prediction 1 29 - -
Stsc94g00022 849 Gene3D - 188 282 IPR012677 -
Stsc94g00022 849 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Stsc94g00022 849 CDD RRM3_MEI2_like 697 782 IPR034454 -
Stsc94g00022 849 SUPERFAMILY RNA-binding domain, RBD 696 781 IPR035979 GO:0003676
Stsc94g00022 849 MobiDBLite consensus disorder prediction 467 499 - -
Stsc94g00022 849 MobiDBLite consensus disorder prediction 652 672 - -
Stsc94g00022 849 FunFam MEI2-like protein 5 isoform 2 188 282 - -
Stsc94g00022 849 FunFam Protein MEI2-like 1 283 378 - -
Stsc94g00022 849 CDD RRM2_MEI2_like 283 353 - -
Stsc94g00022 849 MobiDBLite consensus disorder prediction 521 561 - -
Stsc94g00022 849 MobiDBLite consensus disorder prediction 10 28 - -
Stsc94g00022 849 MobiDBLite consensus disorder prediction 405 423 - -
Stsc94g00022 849 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Stsc94g00022 849 Gene3D - 283 381 IPR012677 -
Stsc94g00022 849 MobiDBLite consensus disorder prediction 385 423 - -
Stsc94g00022 849 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc94g00022 Stsc-Chr94 96619 103729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc94g00022 196 350 Eukaryotic Initiation Factors Gene Family AT1G71770 26.220 1.21e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc94g00022 - - gmx:100814765 1373.99