Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc946g00003 ATGGAGGTTGGAGGTGCGGTGGTGGTTACTATTCACCACCCACTTTCGGCGGCCATATCTTTCACATCGGAGCTCCGATTGACGCACCGTTTGCGGCTACGCGAAGCTCTCGCCATCCTCTACGTTTCTATCCTAATCTTGAGAGAGCAAAGGATTGTTTTTCTAGCTACTCGAATCAACAAGAGGATTCGTTCATTGAAAGAACTCATACCCAACTGCAATAAGAATGATAAAGCTTCAACACTTGATGATGCCATTGACTATCTTAAGACACTGAAGCTTCAGTTGCAGATAATGTCAATGGGGAGTGGAGTTTGCATGCCAATGATGATGTTACCAAATCACCAAAATCAGTTAATGGGAGGTGGAACTGGAATGTGTTATAGGCCATCAGGCACAGGCATTCCCCAGTTCCATATTCCTCATGCTGCTGCTATCACAGATTGGCAAGAATAA 456 0.4496 MEVGGAVVVTIHHPLSAAISFTSELRLTHRLRLREALAILYVSILILREQRIVFLATRINKRIRSLKELIPNCNKNDKASTLDDAIDYLKTLKLQLQIMSMGSGVCMPMMMLPNHQNQLMGGGTGMCYRPSGTGIPQFHIPHAAAITDWQE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc946g00003 151 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 105 IPR036638 GO:0046983
Stsc946g00003 151 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 92 IPR011598 GO:0046983
Stsc946g00003 151 PANTHER TRANSCRIPTION FACTOR PIF3 58 119 IPR044273 GO:0003700|GO:0006355
Stsc946g00003 151 Pfam Helix-loop-helix DNA-binding domain 58 92 IPR011598 GO:0046983
Stsc946g00003 151 SMART finulus 54 98 IPR011598 GO:0046983
Stsc946g00003 151 Gene3D - 56 101 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc946g00003 Stsc-Chr946 12134 13678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc946g00003 27 138 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 44.643 1.96e-20 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc946g00003 HLH 5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc946g00003 K12126 - gmx:100818543 112.079