Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc94670g00001 ATGGACACACCTAATGCAGAACCTCCACCAAGAACAACAACAAAAGAACAAGTTGTTGTTGTTGGTGGTGGGAGCAAGAAAAGCAGCACTACTCCAGGATCCACCACAACAACATCATCACAGCAACAACAACAAGCAGCAGCAGTAGCTCTAAAGTGTCCAAGATGCGACTCACCAAACACGAAATTCTGTTACTACAACAACTACAGCCTCACGCAGCCACGTCACTTCTGCAAGACTTGCCGACGGTACTGGACCAAAGGCGGTGCCTTGAGAAACGTTCCCATTGGCGGTGGCTGCCGCAAGAACAAGAAGCTCAACAAGTCTTCACGGTTACTCTCTTCTTCTCCTGAAACACCAGGAGGACCTTCCTCTTCTTCTTCTTCAGACCTTTCTCTTCTTGGCGGTGGCCTTAAGTTCCTCCATGGTCTCGCTTCTTCACTTCCCCTCCCACCTTCTCTTGATTTTCACCTCGGTGCTGCTGCTGCTGCTCCCGGTGGACCCTTACCTTTCCCTCCAAGACTCCACCATAACCATAACCACCCTCCTTCTACCATCTTCAACAACAACAACAACTACTTCAACATTGATCCTAACTCTTCTTCTGTGATCGGTTTGAACAGCAATAATAATAACAATTACGCGTTTTCCACGGGGTTAGGTGGTGGTGGTGGTGGTGCAATCGAAGGTTACTCTCATCATCATGGTACTTCCAGTAACATTGCTTCTTCTATTGAGTCTTTGAGTTCTATGAACCAGGACTTGCACTGGAAGCTACAACAGCAAAGGTTGGCCATGCTTTTTGGCGGTGGAGATGATGCCAACAATAATCAACAAAAAGACGTCGGCGGCGGCGGACTTGAGAAGCCGCAACCGATTCTGTTTCAGAATCTTGACGGTTCTTCAATCAACAGAAAAGAAGACAATAATAATACAACGGTAATTGCCCCAACTGAGTGGTTCTTTGGAAACTCTTATCCCTCGGTGAATCCTACACCGACTACGAGCACCGGCGGAGGAAGTGGCGGTGGCGGTGGCGAGAATGATAATGGAATGAACTGGGTTGGCGTTCATCATGGTTGGAGTGATGTGCAGCATCATCAATACAGTGCTTTGCCCTAG 1122 0.4804 MDTPNAEPPPRTTTKEQVVVVGGGSKKSSTTPGSTTTTSSQQQQQAAAVALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKLNKSSRLLSSSPETPGGPSSSSSSDLSLLGGGLKFLHGLASSLPLPPSLDFHLGAAAAAPGGPLPFPPRLHHNHNHPPSTIFNNNNNYFNIDPNSSSVIGLNSNNNNNYAFSTGLGGGGGGAIEGYSHHHGTSSNIASSIESLSSMNQDLHWKLQQQRLAMLFGGGDDANNNQQKDVGGGGLEKPQPILFQNLDGSSINRKEDNNNTTVIAPTEWFFGNSYPSVNPTPTTSTGGGSGGGGGENDNGMNWVGVHHGWSDVQHHQYSALP 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc94670g00001 373 MobiDBLite consensus disorder prediction 109 130 - -
Stsc94670g00001 373 MobiDBLite consensus disorder prediction 1 42 - -
Stsc94670g00001 373 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 37 265 IPR045174 GO:0003700|GO:0006355
Stsc94670g00001 373 MobiDBLite consensus disorder prediction 23 42 - -
Stsc94670g00001 373 MobiDBLite consensus disorder prediction 322 352 - -
Stsc94670g00001 373 MobiDBLite consensus disorder prediction 107 130 - -
Stsc94670g00001 373 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677|GO:0006355
Stsc94670g00001 373 Pfam Dof domain, zinc finger 51 105 IPR003851 GO:0003677|GO:0006355
Stsc94670g00001 373 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677|GO:0006355
Stsc94670g00001 373 MobiDBLite consensus disorder prediction 271 290 - -
Stsc94670g00001 373 MobiDBLite consensus disorder prediction 322 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc94670g00001 Stsc-Chr94670 226 1347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc94670g00001 28 373 C2C2-Dof Transcription Factor Family AT5G65590 39.106 1.13e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc94670g00001 zf-Dof 7.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc94670g00001 - - ahf:112747350 409.453