Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc94480g00002 ATGAATTCCTTTCTGTCAATGGAGCGTCCTCCTTCCATACCTTTACTTCGTCATCAACCTACCATAATTCTTGGTATGGATGTTTCTCATGGAGCTCCGGGAAGATCAGATGCGCCATCTATTGCTGCGGTTGTGAGTTCGCGATATCACAATCTATACAAGGAATCTTGGCCTTCAATATCCTGCTGTAGAGCCGCGGTTCGGACTCAGTCACCAAGAGTTGAGATGATTCAGTCTTTATATAAGCCAGTAGGTAATAAAGATGATCAAGGTATCATCAGGGAGCTGCTTATTGACTTCTATGAAACTTCAAACAGAATTAAGCCTCAGCAAATTATAATTTTCAGGGATGGAGTGAGTGAATCACAGTTCATCAAGGTGTTGAATGAAGAGTTAGCTCCAATCATGAAGGCATGCAAACGTCTTGATGACAAGTGGTCTCCCAAGTTCACTTTTATTGTTGCTCAGAAGAATCATCACACTAAGTTCTTTGAGGTCAACTCTCCAGATAATGTTCCACCAGGAACTGTTGTTGACACCAAAATCTGTCATCCCAAGAACAATGACTTTTACATGTGTGCTCATGCTGGGAGGATTGGAACAACTCGACCTACTCATTACCATGTTTTGCATGATGAAATTGAATTCTCTGCTGATGAAATGCAAGAATTAGTTCATTCTCTTTCTTATGTCTACCAGAGGAGCACAAATGCCATATCAATAGTTGCTCCTATTTACTATGCTCACTTAGCAGCAGCCCAAATGGGACAGTTTATCAAGAATGATGAACTGCCGCCTGATGAACTGCCTCAGTTACCCCGTCTTCACGAAGATGTGGCCAACTCAATGTTCTTCTGTTAA 861 0.417 MNSFLSMERPPSIPLLRHQPTIILGMDVSHGAPGRSDAPSIAAVVSSRYHNLYKESWPSISCCRAAVRTQSPRVEMIQSLYKPVGNKDDQGIIRELLIDFYETSNRIKPQQIIIFRDGVSESQFIKVLNEELAPIMKACKRLDDKWSPKFTFIVAQKNHHTKFFEVNSPDNVPPGTVVDTKICHPKNNDFYMCAHAGRIGTTRPTHYHVLHDEIEFSADEMQELVHSLSYVYQRSTNAISIVAPIYYAHLAAAQMGQFIKNDELPPDELPQLPRLHEDVANSMFFC 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc94480g00002 286 SUPERFAMILY Ribonuclease H-like 16 258 IPR012337 -
Stsc94480g00002 286 Pfam Piwi domain 5 260 IPR003165 GO:0003676
Stsc94480g00002 286 FunFam Protein argonaute 3 13 286 - -
Stsc94480g00002 286 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 262 - -
Stsc94480g00002 286 Gene3D - 13 286 IPR036397 GO:0003676
Stsc94480g00002 286 ProSiteProfiles Piwi domain profile. 1 260 IPR003165 GO:0003676
Stsc94480g00002 286 SMART Piwi_a_2 2 260 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc94480g00002 Stsc-Chr94480 1379 3147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc94480g00002 13 286 Eukaryotic Initiation Factors Gene Family AT5G43810 44.702 3.18e-72 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc94480g00002 K11593 - zof:122040462 411.764