Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc94441g00001 ATGGGAGACCAGATTTCACCTTCAATTCTTAGAGCTATTGAAGGCTCTAGAATATCAGTTATCATATTCTCTGAAAACTATGCATCTTCTACTTCCTGCTTGGATGAACTCACTAAGGTCCTTGAGTGCAAGGATTCCAAGGGGCAGCTGGTTTTGCCAGTCTTTTATAATGTGAATCCATTTCAAGTAAGAGGACAGCATGGAAGTTTTGCAGAATATTTAGCAAAACATGAAGAGAAGTTCAGGGATGATATCAACAAAGTGAAAAGGTGGAGAGCAGCTCTATATCAAGTTTCTACTTTGTATGGGTGGCATCTAGGAGAAGGGCAGGAATCAAAGTTTGTGCAGAGAATTGTTGAAGAAATAATGAATAAGCTGAATCTCATACCTTTCAATGTTGCTAAGCATCCTGTTGGGTTGGATTCACCAGCTGAAGATGTTAAATCACTCTTAGATCTTGGATCAGATGGCGTGCAGGCTGTAGGAATTTATGGCATTGGTGGAATAGGAAAAACAACACTTGGTAAGGCTGTTTACAATCATATTTCTCATCAGTTTGAGGGTAGTGCCTTCCTTGCAAATGTCAGAGAAATTTCAACCCAAAGCCATGGCTTAGTTCAACTACAAGAAGCACTTCTCTC 641 0.3994 MGDQISPSILRAIEGSRISVIIFSENYASSTSCLDELTKVLECKDSKGQLVLPVFYNVNPFQVRGQHGSFAEYLAKHEEKFRDDINKVKRWRAALYQVSTLYGWHLGEGQESKFVQRIVEEIMNKLNLIPFNVAKHPVGLDSPAEDVKSLLDLGSDGVQAVGIYGIGGIGKTTLGKAVYNHISHQFEGSAFLANVREISTQSHGLVQLQEALLS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc94441g00001 214 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 214 IPR044974 GO:0006952
Stsc94441g00001 214 Pfam TIR domain 2 129 IPR000157 GO:0007165
Stsc94441g00001 214 Gene3D - 1 132 IPR035897 -
Stsc94441g00001 214 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 104 IPR035897 -
Stsc94441g00001 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 212 IPR027417 -
Stsc94441g00001 214 ProSiteProfiles TIR domain profile. 1 126 IPR000157 GO:0007165
Stsc94441g00001 214 Pfam NB-ARC domain 146 192 IPR002182 GO:0043531
Stsc94441g00001 214 SMART till_3 1 101 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc94441g00001 Stsc-Chr94441 13 1412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc94441g00001 12 207 WRKY Transcription Factor Family AT4G12020 26.108 1.11e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc94441g00001 - - ahf:112749316 370.163