Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc94377g00001 AGAACAGTGTCTACTTTCCTTTCTACCGCGGAGTTCCGCGAGAAGATAGATCGATTGATGATGTCTCGAACTGGATCGATATCACAAACACTTCAGGATGAGGAAGACGACGACGACGTTGATTTCGAAGAGAGAAGGACGCAACGGTTAATGGAGTTTTTCAAAGAACGCCTGAATCATAATTTGAATCGCAATCCTGAAGAAAGTAGCAGCGAAGACGAAGCGAGAGGTTATGAAGAAGAAGAGAAGATGATAAATAATCATGAAGAAAAAGAAAAGGGAACGGTGATCATTAACAATGATTCAGATCATGATGAATCGAGTTACTGTTTAAGTAACTCTTCGCCAACGCTTCATACACCTTCCGCCGAGAGTTCATGGAGTTACAAAGACAGTGAATTAAACGCAGATGAGTTTGTTAGAGTTGCGTATATATCTTCACAACCAGAACCACCGCCTCCTCAATCGGAGTGTTCTTGGCAGCATAGCCGCCAATTCTCTTCACAATCCTCAACTCCATCTTCAATTGAAATGGATTTCTTGTATGATATGAGAGGGCAAATGAGTCAACTATTTCGTGAAATGTCTGAGCTGAGGAACTCCATTAACAGTTGCATCAGCATGCAGATGCAGCTGCAGATGCAAATGCAACAATTCAAGAACCAAGATGTTTACTCCGCTAAAAAAGAAGAGAAACTCAGCAATAATAATACTTCAAAGAAAGGCAAATGTTGCATTTGCAATGAAAGTAAAGTTGAGGCAGTTTTATACAGATGTGGGCACATGTGTGCTTGCCTCAAGTGTGCAAATGAGTTGCAAAGGAAAGGAGAAAATTGTCCAATTTGTAAAACTCCAGTTGTAGATGTTGTGCGA 873 0.4078 RTVSTFLSTAEFREKIDRLMMSRTGSISQTLQDEEDDDDVDFEERRTQRLMEFFKERLNHNLNRNPEESSSEDEARGYEEEEKMINNHEEKEKGTVIINNDSDHDESSYCLSNSSPTLHTPSAESSWSYKDSELNADEFVRVAYISSQPEPPPPQSECSWQHSRQFSSQSSTPSSIEMDFLYDMRGQMSQLFREMSELRNSINSCISMQMQLQMQMQQFKNQDVYSAKKEEKLSNNNTSKKGKCCICNESKVEAVLYRCGHMCACLKCANELQRKGENCPICKTPVVDVVR 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc94377g00001 291 SUPERFAMILY RING/U-box 223 287 - -
Stsc94377g00001 291 PANTHER BNAC05G24000D PROTEIN 1 291 - -
Stsc94377g00001 291 MobiDBLite consensus disorder prediction 61 129 - -
Stsc94377g00001 291 Pfam Zinc finger, C3HC4 type (RING finger) 241 288 - -
Stsc94377g00001 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 291 IPR013083 -
Stsc94377g00001 291 ProSiteProfiles Zinc finger RING-type profile. 244 283 IPR001841 -
Stsc94377g00001 291 MobiDBLite consensus disorder prediction 61 100 - -
Stsc94377g00001 291 MobiDBLite consensus disorder prediction 146 173 - -
Stsc94377g00001 291 SMART ring_2 244 282 IPR001841 -
Stsc94377g00001 291 MobiDBLite consensus disorder prediction 101 129 - -
Stsc94377g00001 291 MobiDBLite consensus disorder prediction 157 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc94377g00001 Stsc-Chr94377 114 1333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc94377g00001 212 286 C3H Transcription Factor Family AT3G06140 33.766 4.92e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc94377g00001 - - adu:107481960 393.275