Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc94172g00001 ATGACCACTACTACTATCTCAATGTTCATGTCTAGATTAACACAACCCTTAACAAATAATGTTCCAATTAGCAATGTTCCAAAATTGAATGTGATGAGGCAAATTCAGAAAGAGAAAGTAGTGTTGATCATGGGAGCCACAGGAGCTGGAAAGTCAAAGCTTTCCGTTGACCTTGCAACATTATGTTTTCCTTCAGAAATCATCAACTCAGACAAAATCCAAGTCTATGAAGGTCTTGACATAGTCACAAACAAAATCTCCAAACAAGAGCAAAAAGGGGTGCCACATCATTTACTAGGGACACAAGATCCCAACATTGATTTCACATCCTATGATTTTTGTGACATGTCACTAGGTGCCATTGACTCAATCACTAGAAGGGAACACCTTCCAATCATAGTTGGTGGATCCAATTCATACCTTGAAGCCTTAATTGATGATGATGATTACAAATTCAGATCAAGGTATGAGTTTTGTTGCCTTTGGGTGGATGTAAAAATGGGTGTTCTTGATTCTTATGTACAAAAAAGGGTTGACCAAATGCTACTAAATGGCATGGTCAACGAGCTTAGACCCTTTTTCAACAATAATAATAATATTAATAACAAGGACTATTCAATTGGGATTAGAAAAGCAATTGGGGTGCCTGAATTTGATGAGTATTTTAGAAAGGAAGATGTTGTTGATGAAGAAACAAAGCAAAGGTTGCTTGATGAAGCAATCAATGAAGTCAAAGTCAACACTTGCAACTTGGCTAGGAAACAATATGGGAAGATCCAAAGGCTAAGGAATGTTAAGAGATGGAAGATTCATAGGTTAGATGCAACACCTGTTTTTCAAAAACATGGACAAGAAGAAGCAAATAAGGCTTGGAACAAGCTTGTGTTGGAGCCTAGTGCTATGATTATTGCAAAGTTTTTATATAATAACAACTCATCGTCATCATCATCATCATCCATCGCTACTACTACTTCCAATAATAGACTTGTTTCTGGTGGATTTAGTAGTGTTCCTCTTCCAGCTTCATCAGAGAGTGTTGTATGTGTGTGA 1050 0.3705 MTTTTISMFMSRLTQPLTNNVPISNVPKLNVMRQIQKEKVVLIMGATGAGKSKLSVDLATLCFPSEIINSDKIQVYEGLDIVTNKISKQEQKGVPHHLLGTQDPNIDFTSYDFCDMSLGAIDSITRREHLPIIVGGSNSYLEALIDDDDYKFRSRYEFCCLWVDVKMGVLDSYVQKRVDQMLLNGMVNELRPFFNNNNNINNKDYSIGIRKAIGVPEFDEYFRKEDVVDEETKQRLLDEAINEVKVNTCNLARKQYGKIQRLRNVKRWKIHRLDATPVFQKHGQEEANKAWNKLVLEPSAMIIAKFLYNNNSSSSSSSSIATTTSNNRLVSGGFSSVPLPASSESVVCV 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc94172g00001 349 FunFam Adenylate isopentenyltransferase 5, chloroplastic 167 270 - -
Stsc94172g00001 349 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 37 306 IPR039657 -
Stsc94172g00001 349 Pfam IPP transferase 74 147 - -
Stsc94172g00001 349 Pfam IPP transferase 153 256 - -
Stsc94172g00001 349 Gene3D - 37 307 IPR027417 -
Stsc94172g00001 349 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 167 270 - -
Stsc94172g00001 349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 149 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc94172g00001 Stsc-Chr94172 776 1843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc94172g00001 154 319 C2H2 Transcription Factor Family AT2G27760 30.052 4.14e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc94172g00001 K10760 - gmx:100803964 421.394