Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc93g00013 GTCTATCAGAGAAGGGTTAATAGGCAGAAAAAGATAGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAGTCAGGTACATCCCCTTTTGACAAAAAGAGATTCTGAAGATTTTGATGATGAGAAAAGCTTGCATGGGTGGAGATTACATGATGAGAAAATAGAGAGATCAGGAAGCATCCCCAAAAGAGAAACTAGTGTCAGAAAATCAGTTAAGAAGCGGAAAATGACTGTAGAGAATGGTAGAGCCAGGAAAGGTAAAGGTAGTTTTGCTGAGAGAGAGTTGGATTCAGATAATTCAACTGAAGACAAACCTAACCAACATCTGAGGAGGACTACTAGAAGTAAGCAAGCCAGGGATATTGTGAACGAAGATGCTGATTTGGAAGGGGATTATTCTCCTCCCTATCATCATAGAAAAGCTTTAAGCGATCAAACAAATTGCACTGGAAGTGATGCTGTTTCTGATGATTCACTTGATGATAAATTTATTGACAATGATGTGGTTTCGGATGATACAATGGTCTATGATTCTGATTGGCATCAGAGAGGAGAACATAGCAGAAGTCAAGTTGAAGAAGACATGGAAGATGCAGTTTCTGAGGATTCGATGGATGATGGTTCTCTTCAGCTTCATAGGAAGAATTCTAAAAGCAAGCATGCTAGATACATTAGAAAAGGTAGATGCCTTGCTGAGAAAGAGGAAATGATATCTGATGACCAACTGGAGCAGCACAAGAAGAAGCCGCGACAGAGGAATCCTAAAAGCAGGCAAGCCAAATACCTTGCAAGAGATGATGCGATATCAGATGGTCGATTGGAGGGCCATTGTCGCAAGTATAGAAAGACTCCTAAAGGTAGGGTGGCCAAATATGTTGCAGGGGAAGATGTATCGTCTGATGAGCAATTGGAGAATTACAGTCAGAAGCAGCAAACAAGTCTTCCTAAAAGGCGGAAAAACAAAGGTGCATTGACTGATGACCAATTGGAGGACCATTTTCAGAAGCAGCAAAAGAGTGTTCCTAGGAGAAGGCAAAACAAAGGCATCCAAAGAGGGGCTAAAGACGCAATGTCTGATGACCAATTGGAGGATGACATTCAGAAGCAGCAAACCAGTGTTTCTAGGAGAAGGCAAAACAAAGGAATTGAAAGAGAAGATGTAATGTCTGATGACGAATTGGAGGATCATGTTCAGAAGCAGCGGAGAAGTATGCCTAGAAATAGGCAAAACAATAATTCTCGTATGGTGCGTAAAACTCCTAAACGAAAGCAGGCTAAATGCGTTGATGATGAGGAGGAGGAGGAGGAGGAGGATGATATAAATTCTGATGATGAAGTGGAAGATGATTCTCAGCAGAAGCAGCAGAGAACTCTTAGAAGTAAGCAATCAAAACCAATGACACTTAAACAGATGAAGCAAGCTCACTCCCTCCAAATGAAAAATCAGACACCCCGATCTGTAAAACGAGGTGCTCAGACACTAAAGAAATTAAAGGCAACTCATGTGCGGAATAAGCAATCTGGTAAATCCAGAGAGTTTAGTCTGAAAATGGAAGAGGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGTCCCAAAAGTAGAGGAGTCTGATGAAATATCAAAAGAAAAGCAAACCAAAAAGAAAAGGGTGAAGAATGCTACAGCTGCAAAGGCAGCTAGCAATGCTAAAATGAAGGATGAGGAAAAAGAATTCCAGTGTGACATTGATGGGTGCACCATGAGTTTTGGGTCAAAACAGGAGCTGATGCATCACAAGAGGAATATCTGTCCTGTAAAAGGTTGTGGAAAGAAGTTTTTCTCGCACAAATATCTGGTGCAGCACCGGCGAGTTCACGAGGATGACCGCCCCTTGAAGTGCCCTTGGAAGGGCTGCAAGATGAGTTTCAAGTGGGCATGGGCTCGTACCGAACATATTCGAGTCCACACCGGTGCACGACCCTATGTATGTGCTGAGCCAGGCTGCGGGCAAACATTCAGATTTGTGTCCGATTTCAGTCGCCATAAGCGTAAGACTGGGCACTCAACAAAGAAGAATCGGCAATAG 2079 0.4295 VYQRRVNRQKKIVAGKWCGKVWMSSQVHPLLTKRDSEDFDDEKSLHGWRLHDEKIERSGSIPKRETSVRKSVKKRKMTVENGRARKGKGSFAERELDSDNSTEDKPNQHLRRTTRSKQARDIVNEDADLEGDYSPPYHHRKALSDQTNCTGSDAVSDDSLDDKFIDNDVVSDDTMVYDSDWHQRGEHSRSQVEEDMEDAVSEDSMDDGSLQLHRKNSKSKHARYIRKGRCLAEKEEMISDDQLEQHKKKPRQRNPKSRQAKYLARDDAISDGRLEGHCRKYRKTPKGRVAKYVAGEDVSSDEQLENYSQKQQTSLPKRRKNKGALTDDQLEDHFQKQQKSVPRRRQNKGIQRGAKDAMSDDQLEDDIQKQQTSVSRRRQNKGIEREDVMSDDELEDHVQKQRRSMPRNRQNNNSRMVRKTPKRKQAKCVDDEEEEEEEDDINSDDEVEDDSQQKQQRTLRSKQSKPMTLKQMKQAHSLQMKNQTPRSVKRGAQTLKKLKATHVRNKQSGKSREFSLKMEEEEEEGGPSTRLRKRVPKVEESDEISKEKQTKKKRVKNATAAKAASNAKMKDEEKEFQCDIDGCTMSFGSKQELMHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKNRQ 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc93g00013 692 ProSitePatterns Zinc finger C2H2 type domain signature. 661 685 IPR013087 -
Stsc93g00013 692 PANTHER ZINC FINGER PROTEIN ZIC AND GLI 245 684 - -
Stsc93g00013 692 MobiDBLite consensus disorder prediction 431 447 - -
Stsc93g00013 692 ProSiteProfiles Zinc finger C2H2 type domain profile. 599 628 IPR013087 -
Stsc93g00013 692 Gene3D Classic Zinc Finger 544 598 - -
Stsc93g00013 692 MobiDBLite consensus disorder prediction 178 195 - -
Stsc93g00013 692 MobiDBLite consensus disorder prediction 320 339 - -
Stsc93g00013 692 SMART c2h2final6 599 623 IPR013087 -
Stsc93g00013 692 SMART c2h2final6 576 598 IPR013087 -
Stsc93g00013 692 SMART c2h2final6 629 653 IPR013087 -
Stsc93g00013 692 SMART c2h2final6 659 685 IPR013087 -
Stsc93g00013 692 MobiDBLite consensus disorder prediction 349 403 - -
Stsc93g00013 692 FunFam Probable lysine-specific demethylase ELF6 626 655 - -
Stsc93g00013 692 FunFam Probable lysine-specific demethylase ELF6 656 685 - -
Stsc93g00013 692 ProSitePatterns Zinc finger C2H2 type domain signature. 601 623 IPR013087 -
Stsc93g00013 692 MobiDBLite consensus disorder prediction 178 223 - -
Stsc93g00013 692 Coils Coil 555 575 - -
Stsc93g00013 692 MobiDBLite consensus disorder prediction 457 490 - -
Stsc93g00013 692 MobiDBLite consensus disorder prediction 259 278 - -
Stsc93g00013 692 ProSitePatterns Zinc finger C2H2 type domain signature. 631 653 IPR013087 -
Stsc93g00013 692 Gene3D Classic Zinc Finger 599 684 - -
Stsc93g00013 692 MobiDBLite consensus disorder prediction 59 160 - -
Stsc93g00013 692 MobiDBLite consensus disorder prediction 141 155 - -
Stsc93g00013 692 MobiDBLite consensus disorder prediction 236 567 - -
Stsc93g00013 692 MobiDBLite consensus disorder prediction 59 139 - -
Stsc93g00013 692 SUPERFAMILY beta-beta-alpha zinc fingers 639 683 IPR036236 -
Stsc93g00013 692 MobiDBLite consensus disorder prediction 506 550 - -
Stsc93g00013 692 ProSiteProfiles Zinc finger C2H2 type domain profile. 629 658 IPR013087 -
Stsc93g00013 692 SUPERFAMILY beta-beta-alpha zinc fingers 599 636 IPR036236 -
Stsc93g00013 692 ProSiteProfiles Zinc finger C2H2 type domain profile. 659 690 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc93g00013 Stsc-Chr93 121069 123467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc93g00013 324 690 C2H2 Transcription Factor Family AT3G48430 40.148 5.51e-75 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc93g00013 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc93g00013 - - aip:107632400 1204.12