Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc93g00012 ATGCGTCGTTTAGCACTAGTGTGTGAAGATTGCGCCGGAAACTGTGTGTTAGTTCACGGAGAGGAGAAAAAATCGTCACTTTTGGCTTCCTCTTTCTTCAAGATCATGCTTGATTCTGACTTTTCCACTATTATGTATCTTCCTGCTAAGTTTAAACCTACTGTAGCTGCCCTGGTCAATAAGAAAGTCATTCTTGATGACAAAAATGGGAAGAAATGGAAAGTAACCTTATCTGAAGTTAGTGGTCACTTGGCTTTCAAGGAAGGATGGAATAAGTTTTCGTCAGACCATGGACTCGAACATGGAGATTTTCTGGTATTCCATCATATTACTGATGTGCTCTTTTATGTTGACATCTATGATACATCTGGGTGTCAAAAGCTTTGTCCTTCGGATAGAAGAACTAAGACGAAACGAAGAAGGGACAGTACTGGCTCTCCAGTTAGAGATGTCATGTTGCCTACACAAGATCAAAATATCCGGGTTGTTTCTGAGCCTAAGGCTACAAAAACGTATAGCCGGAACAAAGTGTTTGGTGTAGGAGGAACACTAAATAATTTGGAGAATGTTTCAAAACATGCTAAGAGCAATGGAGGTGTCCAATCTATGAGCACCCCCAAAAACTATGAGAACACTTGGAAAATTACAACCACAGACTCAAGAGTTTCTCCTGTTGACAACAGATTGGGCACGAATCCAGTCGATGCAATTCTTTGCGACAACGTTCCTTCATTTGAAGAGAGATTGTTAAGAGGAGCTGCTCCATATTTGTCTGAAGCTGAACTATCTGGAAAAATGGATTCTATTAGAAATACTGAGAGAAGGACATGTAACAATATTTCTACTTCCAAAGTTGGAGAAAGAAAAGAAAATAATGTCACTAGTTTGAAAAGGGAAGTTAAAGAGTGCCAATATGCTCAGGGCTTAGAAAGTGACCTGGTGACAATGTCCAAGGGAAAACATGGATTGCAAAATGGTGGATGTCCCAATACCAAACATAACGGTATACCAAGTGTCTCGAATGCTATTCAAAATGGTGAAATCTCAAAAAAGATTAAGAAAGAGCCTGTGAACAGGAATCCCAGCGAGAAGTCCACTTTCAAGGATAAAGCATCTGCAGAAGGTGAAATGTCCAAAAGAATTAAAAAAGAGCAGCACATGGATATGAATTACAATGTGTCCAAATTCAAGTATGAATTGGAAGCCAAAGATATTGAAGTTCCCAAAGGCTTGCCAAAGGTTATCAAGAAAGAGTTTGAGCAGAGTTCACTCAAGCCTGATCAAGATGATCATAACAATGTTGATGATGATAATGTTCAATTGGCGAAACCTGTCCGCTGCGTGGTGCCGGATGACAATGATAAGTTTCTTAAATTGCCAGCACACTTGCATCGGTGCCGGAATTATAAATCTAACAGGATGGTGGTGATCCTGCAAGATCCTCAGAGGAGACTATGGCCAGTCCTTTACCATGATCTTGAAAGCTATGATTTATTGGACGATGATCCGGATAGGTATAGTGCAATAGGCTTTCATGCACTGGTGAAAGGGTGGTCACAGTTTCGCAGAGCTAATAACATTCAATCAGGAGATGTGTGTACTTTTGAGCTTAAGGAGGAGCCTAAACACATCTTCAGTGTAGATATAGTCCACAATTAA 1659 0.402 MRRLALVCEDCAGNCVLVHGEEKKSSLLASSFFKIMLDSDFSTIMYLPAKFKPTVAALVNKKVILDDKNGKKWKVTLSEVSGHLAFKEGWNKFSSDHGLEHGDFLVFHHITDVLFYVDIYDTSGCQKLCPSDRRTKTKRRRDSTGSPVRDVMLPTQDQNIRVVSEPKATKTYSRNKVFGVGGTLNNLENVSKHAKSNGGVQSMSTPKNYENTWKITTTDSRVSPVDNRLGTNPVDAILCDNVPSFEERLLRGAAPYLSEAELSGKMDSIRNTERRTCNNISTSKVGERKENNVTSLKREVKECQYAQGLESDLVTMSKGKHGLQNGGCPNTKHNGIPSVSNAIQNGEISKKIKKEPVNRNPSEKSTFKDKASAEGEMSKRIKKEQHMDMNYNVSKFKYELEAKDIEVPKGLPKVIKKEFEQSSLKPDQDDHNNVDDDNVQLAKPVRCVVPDDNDKFLKLPAHLHRCRNYKSNRMVVILQDPQRRLWPVLYHDLESYDLLDDDPDRYSAIGFHALVKGWSQFRRANNIQSGDVCTFELKEEPKHIFSVDIVHN 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc93g00012 552 ProSiteProfiles B3 DNA-binding domain profile. 442 552 IPR003340 GO:0003677
Stsc93g00012 552 Gene3D - 414 552 IPR015300 -
Stsc93g00012 552 Gene3D - 26 125 IPR015300 -
Stsc93g00012 552 ProSiteProfiles B3 DNA-binding domain profile. 30 123 IPR003340 GO:0003677
Stsc93g00012 552 MobiDBLite consensus disorder prediction 355 378 - -
Stsc93g00012 552 SUPERFAMILY DNA-binding pseudobarrel domain 448 541 IPR015300 -
Stsc93g00012 552 CDD B3_DNA 31 121 IPR003340 GO:0003677
Stsc93g00012 552 CDD B3_DNA 453 549 IPR003340 GO:0003677
Stsc93g00012 552 MobiDBLite consensus disorder prediction 132 151 - -
Stsc93g00012 552 MobiDBLite consensus disorder prediction 132 146 - -
Stsc93g00012 552 Pfam B3 DNA binding domain 457 540 IPR003340 GO:0003677
Stsc93g00012 552 Pfam B3 DNA binding domain 32 121 IPR003340 GO:0003677
Stsc93g00012 552 PANTHER B3 DOMAIN-CONTAINING 27 540 - -
Stsc93g00012 552 SMART B3_2 32 123 IPR003340 GO:0003677
Stsc93g00012 552 SMART B3_2 444 548 IPR003340 GO:0003677
Stsc93g00012 552 SUPERFAMILY DNA-binding pseudobarrel domain 31 125 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc93g00012 Stsc-Chr93 80575 84190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc93g00012 26 128 REM Transcription Factor Family AT3G53310 32.039 5.57e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc93g00012 B3 7.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc93g00012 - - adu:107478866 721.079