Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc93g00007 ATGGGTGGAACTTTCATGTCGCTTCCTGCTGATTATCGTGATTACTTCATAAGGAATCTTCACGATGCTTTGTCTGGACATACTTCTGCCAATGTAGAAGAAGCAGTTGGATACTCTGAGCAGAGTGCAACTAAATGTATCGGCATGACAATCGAGACAAGGCCAGATTATTGTCTTGGGCCTCACTTGCGGCAAATGCTTTCCTATGGTTGTACTCGGTTGGAGATTGGAGTCCAAAGCACCTATGAGGATGTTGCCCGAGACACTAATAGAGGACATACAGTAGCTGCTGTGGCTGATTGTTTTTGCTTGGCAAAAGATGCCGGTTTCAAGGTTGTTGCTCACATGATGCCTGATCTTCCTAATGTTGGTGTTGAAAGGGACATGGAAAGTTTCCGGGAGTTTTTTGAGAGCCCCTCATTTAGAGCAGACGGGCTTAAAATATATCCTACACTCGTTATACGTGGAACTGGACTTTATGAGCTATGGAAAACTGGGAGGTATAGAAATTATCCACCTGAGCAACTTGTGGATATCATAGCTAGGATTCTTGCAATGGTGCCACCTTGGACACGTGTTTATAGAGTTCAGCGGGATATTCCCATGCCTCTGGTTACCTCTGGGGTTGAGAAGGGAAATCTGAGAGAGCTAGCATTAGCTCGAATGGAAGACCTGGGATTGAAATGTCGTGATGTTCGGACCAGAGAAGCTGGAATCCAGGATATTCACCACCAAATTAGGCCAGAGGAGGTGGAGCTTGTTCGTCGTGATTATACGGCAAATGAGGGCTGGGAAACATTTCTCTCATATGAAGATACACGTCAGGATATCCTTGTTGGTCTTTTACGTCTGCGAAAATGTGGCCGAAACGTTACTTGCCCAGAGCTTATGGGCAAGTGTTCTATTGTTCGTGAACTCCATGTTTATGGAACTGCTGTACCAGTTCATGGGAGGGATGCTGACAAGCTACAACACCAGGGTTATGGTACGCTTCTAATGGAGGAGGCGGAGCGTATTGCTTTAAGAGAACACCGATCAACAAAAATAGCTGTAATTTCAGGGGTTGGCACCCGCCATTATTACAGGAAACTAGGATATGAGCTTGAAGGGCCTTACATGGTTAAATATCTAGTCTAG 1137 0.4529 MGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVGYSEQSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPSFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIRPEEVELVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGRNVTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIALREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLV 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc93g00007 378 Gene3D - 229 378 - -
Stsc93g00007 378 FunFam Elongator complex protein 3 226 378 - -
Stsc93g00007 378 NCBIfam tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 1 377 IPR034687 -
Stsc93g00007 378 SMART MiaB 2 182 IPR006638 GO:0003824|GO:0051536
Stsc93g00007 378 Pfam Acetyltransferase (GNAT) family 230 366 IPR000182 GO:0016747
Stsc93g00007 378 Pfam Radical_SAM C-terminal domain 144 223 IPR032432 -
Stsc93g00007 378 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 227 378 IPR000182 GO:0016747
Stsc93g00007 378 Pfam Radical SAM superfamily 41 126 IPR007197 GO:0003824|GO:0051536
Stsc93g00007 378 SUPERFAMILY Radical SAM enzymes 2 189 - -
Stsc93g00007 378 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 1 377 IPR039661 -
Stsc93g00007 378 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 119 373 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc93g00007 Stsc-Chr93 53610 55819 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Stsc93g00007 Acetyltransf_1 7.8e-11 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc93g00007 K07739 - gmx:100818764 750.355