Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc93794g00001 ATGGATTGCATGAGAATCCAAAGCACCTTGTCTCATAAGAAGAATTGGAACTATGATGTGTTTGTCAGTTTCAGAGGCGAGACTCGCAACAACTTCACCGATCATCTTTTTGATGCTCTCCACAGGCACGGCATACTTGCCTTCAGGGATAATACAAAGCTCGATAAAGGAGAAGTTATATCAGAAGGGCTTATGCAAGCTATTGAAGGATCACAGGTTTTCATTGTGGTCTTCTCAATGGACTATGCTTCCTCCAGATGGTGCTTACGAGAATTGGCAAAAATAGCTGATTGCAATCAAGCAACGGGACAACATGTTCTGCCTATTTTCTATGATGTGAGTCCAGCTGAAGTGAGATGGCAAAGTGAAAATTATGGAAAAGCCTTTTTGAAACATGAACAAAGATACAAACATGATGCAGACATGATGGAGCAAGTGCGAACATGGAGGAGAGCTCTAAAAATGGTTGCCGACCTATCTGGCTGGGATGTGAAGGATAAGCCACAATCTGCTGAGATTGAAAAAATTGTCAAAGTGGTAACAAGAATCGTGAATCCCAAACTATCGTCAAGTCCATCCAATGATATAGTAGGGATGCAGTCCCCTTTAGAAGAACTAGAAAAGCTTCTAGTTTCGGACTCACACGATGATGTTCGAGTTGTAGGGATTTCTGGAATGGGCGGCATAGGAAAGTCAACTCTGGCCACTATTTTATATGAAAAAATCTCTCATCAATTTGATGTTCCATGTTTTGTGGATGATGTAAGCAAAATCTACGAAAGTTATGGTCCACTTGGTATACAAAAGCAACTTCTTTGTCAAGCTTTCAAGGAAGAAGATTTTCCAATATGGAATCTTTCATTTGGAAATAATCTGATTCAAACTAGGTTCCGCACTAGAAAGGCTCTCATAGTCCTGGATAATGTTGATCAGAGGATTCAATTAGAGAAGTCGGCAATAAAACGGGAATGGTTAGGTAAAGGGAGTAGAATCATCATAGTTTCTAGAGATGAACATATATTGAAAGAGTATGGAGCAGATGGTGTTTACAAAGTTAAACTCTTAAATGATGAGAATGCTCTTCAATTGTTTTGTGGAAAGGCTTTCAAAAGTAATCATGTTGCAAAAGATTATGAAAGCCTTACAGAGTCTGCGTTAGCATATGCTAAGGGACTTCCATTAGCAATAAGAGTGTTGGGCACATTTTTGTTTGGGCGAAATGTCTCGGAGTGGAGTAGTGCATTGGTAAGACTGAAAGAAAGGCCAACCAAAGATATTATGGATGTGCTACGAATCAGTTTTGATGGACTTGAGGATATGGAAAAGGAAATATTTCTTGATATTGCATGTTTTTTTCGTAACGACGACCCTGATGATTACGTGAAAGATATTTTACGTATTCGAGGATTTCATCCTGATATTGGCATAAGAACTCTCATTGATAAATCACTCATAACTTTTAATTCGGGGAATTTCGTTATGCATGATCTGTTGAGAGAGTTGGGTAGAAGTCTTGTTCGAGAAAAATCACCCAAAGAACCAATAAAGTGGAGCAGGTTATGGGTGTTGCGGAAACGTGGATATTTTCAATACAAATCAATCCTATGA 1608 0.3893 MDCMRIQSTLSHKKNWNYDVFVSFRGETRNNFTDHLFDALHRHGILAFRDNTKLDKGEVISEGLMQAIEGSQVFIVVFSMDYASSRWCLRELAKIADCNQATGQHVLPIFYDVSPAEVRWQSENYGKAFLKHEQRYKHDADMMEQVRTWRRALKMVADLSGWDVKDKPQSAEIEKIVKVVTRIVNPKLSSSPSNDIVGMQSPLEELEKLLVSDSHDDVRVVGISGMGGIGKSTLATILYEKISHQFDVPCFVDDVSKIYESYGPLGIQKQLLCQAFKEEDFPIWNLSFGNNLIQTRFRTRKALIVLDNVDQRIQLEKSAIKREWLGKGSRIIIVSRDEHILKEYGADGVYKVKLLNDENALQLFCGKAFKSNHVAKDYESLTESALAYAKGLPLAIRVLGTFLFGRNVSEWSSALVRLKERPTKDIMDVLRISFDGLEDMEKEIFLDIACFFRNDDPDDYVKDILRIRGFHPDIGIRTLIDKSLITFNSGNFVMHDLLRELGRSLVREKSPKEPIKWSRLWVLRKRGYFQYKSIL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc93794g00001 535 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Stsc93794g00001 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 448 IPR027417 -
Stsc93794g00001 535 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 521 IPR044974 GO:0006952
Stsc93794g00001 535 SUPERFAMILY "Winged helix" DNA-binding domain 425 524 IPR036390 -
Stsc93794g00001 535 PRINTS Disease resistance protein signature 220 235 - -
Stsc93794g00001 535 PRINTS Disease resistance protein signature 296 310 - -
Stsc93794g00001 535 PRINTS Disease resistance protein signature 389 403 - -
Stsc93794g00001 535 Gene3D - 10 182 IPR035897 -
Stsc93794g00001 535 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 162 IPR035897 -
Stsc93794g00001 535 SMART till_3 17 159 IPR000157 GO:0007165
Stsc93794g00001 535 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Stsc93794g00001 535 Pfam NB-ARC domain 202 424 IPR002182 GO:0043531
Stsc93794g00001 535 Pfam TIR domain 17 193 IPR000157 GO:0007165
Stsc93794g00001 535 Gene3D - 183 347 IPR027417 -
Stsc93794g00001 535 Gene3D - 354 438 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc93794g00001 Stsc-Chr93794 1700 3464 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc93794g00001 197 521 WRKY Transcription Factor Family AT5G45050 34.356 2.86e-52 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc93794g00001 - - adu:107476580 813.527