Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc93321g00001 ATGTCGACGGTATACGTTTTGGAACCGCCGACGAAGGGGAAGGTGGTTATCAACACAACGCGGGGCCCACTCGACATCGAGCTATGGCCGAAGGAAGCACCCAAAGCTGTCAGGAACTTCGTTCAGCTCTGCATGGAAGGTTACTACGACAACACCATCTTCCACCGCATAATCAAGGACTTTCTTGTTCAGGGTGGTGACCCCACCGGCACCGGCACCGCTTATAAGCAAAGTTTTACTGGGGAGTTCGTTGAAGACTATTGCTGCACAACTAAAATTATCTGCC 286 0.514 MSTVYVLEPPTKGKVVINTTRGPLDIELWPKEAPKAVRNFVQLCMEGYYDNTIFHRIIKDFLVQGGDPTGTGTAYKQSFTGEFVEDYCCTTKIIC 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc93321g00001 95 SUPERFAMILY Cyclophilin-like 3 79 IPR029000 -
Stsc93321g00001 95 Gene3D - 2 92 IPR029000 -
Stsc93321g00001 95 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Stsc93321g00001 95 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Stsc93321g00001 95 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 81 IPR002130 GO:0000413|GO:0003755
Stsc93321g00001 95 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 86 IPR044666 -
Stsc93321g00001 95 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 86 IPR002130 GO:0000413|GO:0003755
Stsc93321g00001 95 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc93321g00001 Stsc-Chr93321 4930 6074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc93321g00001 9 72 U-box Gene Family AT5G67530 54.688 3.13e-19 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc93321g00001 K12737 - egr:104436322 153.295