Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc93304g00001 ATGATGAAAAGCTTCTTCACCTTTCTTCTATATTGTTGCTTCTCTGTGGTGAACAATATGGTGGCTTCTACTGCAAGCGACACCATTGATACACTGCAATCCATCAGTGATAACAAGGGTGACACCATGGTTTCATCTGATGAAACCTATGCACTTGGATTCTTCAGCCCGAAAAATACCACCAACCGTTACATCGGAATTTGGTACAACAAAGTCCCAATACAGACAGTGGTATGGGTTGCCAACAAGGACAACCCCCTCACTGACTCTTCAGGAGTCTTGAAAGTCAACGCCACCGGAATTCTCATCCTTCTCAACCGTAACAAAGAAGTAATCTGGTCCTCCAACACAACAACACCAGCACAGGATCCGGTAGCAAAGCTTTTGGATTCTGGGAATCTTGTGGTGCAAGAAAGAAACAATAACAGAGCAGACGGCTTTTTATGGCAGAGTTTTGACTATCCTTCCGACACTCTTTTGCCTGGACAGAAGTTTGGAGTGAATCTAGTCACAGGACTGAACAGATTCTTGACATCTTGGAAGAGTTTGGATGACCCTTCGCACGGTAGCTATGCTTATGGACTGGATATCCATGGGTACCCACAGTTATTTATAAAGGATGGAAGTACCAAAAGATTTCGATTCGGATCATGGAATGGTGTTCAGGTTAGCGGGGTAGCTCAGTTGACAGAGAATCCAATATTCATATATGAATTTAGTTATAGTCAGGAAGAAGCATATTTTATATATGAGCTAATCAATAGTTCAGTTCTTCATAGGCTTCGATTAACACCGGACGGATTTAGCCACCGTACTACTTGGAGCTATGAAAAAATGGAGTGGATCACTTTCTTCCACATTCCTGCAGATTACTGTGATTACTATTCACAATGTGGAGCTTATGCTAGTTGTAATGTAAACAGATCTCCTAAATGCAAATGCCTGGATAAATTTGTACAAAATGGGACAAATTGTGTAAGGAGAACTTCCTTGAACTGCCATGAAGACGGGTTCTTAAGGTATCCGGGGCTAAAGTTACCGGACACGGACAAATCATGGTTTGATAGAACAATTAGCCTTGATGATTGCAGGATTTTGTGCTTGAAGAATTGCTCATGTACAGCTTATGCTCCTTTGGATATCAGCAATGGTGCAAGGGGGTGTATACTTTGGTTTGAAGGTTTGATGGATTTGAAAGAGTTGAATTCATCTCTTCAAGATGTTTACGTAAGGGTGGCAAAGACAGAATTAGGTAGTATAGAAGTGCATAATTCAAACAAATCCAACACTAGGCACAAGCAAGATGCTATCATCATAAGCTCCACTTTGGTGTCTTTTGGGGCTTTAGTCTCCTGTTTAGCATTGATCTTCTATAAATGGAAGACAAGACAAAGAAGCAGAAATATGAGAAGAAATAAAGAAACACAAGCAGGTGCAACAAATGATGATCAGCATGAGGAAGATATAGATTTACCATTGTTTGATATTTCTGCAATTTCATTAGCAACAAATAACTTTTCAACTGATAACATTCTGGGAAAAGGAGGTTTTGGATTAGTTTATAAGGGTATCCTAGAAGATGGAAGAGAAATAGCTGTCAAAAGACGGTCAGAGAATTCAACCCAAGGACTCAAAGAATTCAAAAATGAAGTTAAGCATGTTTCCAAACTTCAACACAGGAATTTAGTGAAGCTACTAGGGTGCTGCATTCAAGCAACAGAGAGGCTTCTGATTTATGAATTTATGCCCAATAAGAGCTTGGACTTCTTCATATTTGATGAACAGAAGAGCAAGTTACTAAATTGGCCAACGCGTTTACATATAATCAATGGGATTGCTCGAGGTCTTCTTTATCTTCATCAAGATTCAAGACATAGAATAGTTCATAGAGATCTCAAAGCCGCCAATATATTGTTAGATGCTGAGATGAACCCAAAAGTATCGGATTTTGGACTGGCTAGAAGCTTCGGAGGAAATGAGGTTGAAGCAAGCACACAAAATGTGGTTGGAACCTATGGATATCTATCACCAGAATATGTAATTGATGGAGTATACTCAACAAAATCTGATGTATTTAGCTTTGGTGTGTTGGTGTTGGAGATTGTGAGTGGGAAGAGAAACAGAGGCTTCAATCATCAAGATCACCACTTTAACCTTCTTGGTCATGCATGGAGATTGTTTACAGAAGGCAAAGGGTATGAAATAGTTTGTGATGCAATAAGAGACACATCAAATATATCTGCAGTGCTAAGATTGATTCATATAGGACTACTATGTGTGCAGCAAAACCCAGATGATAGACCAAGCATGTCAACTGTGGTGTTAATGCTGAGTAGTGAAGCATCATTGCCTCAGTCTAAAATGCCAGGATTCTTTACAGAGAGAGAGATGGGAGGTGATGGTTCTTCATCGAGTAGTTATAAAGTATTCTCAAATAATGATTTTACAGTTAGTCTGTTGGAAGCTAGGTAG 2472 0.396 MMKSFFTFLLYCCFSVVNNMVASTASDTIDTLQSISDNKGDTMVSSDETYALGFFSPKNTTNRYIGIWYNKVPIQTVVWVANKDNPLTDSSGVLKVNATGILILLNRNKEVIWSSNTTTPAQDPVAKLLDSGNLVVQERNNNRADGFLWQSFDYPSDTLLPGQKFGVNLVTGLNRFLTSWKSLDDPSHGSYAYGLDIHGYPQLFIKDGSTKRFRFGSWNGVQVSGVAQLTENPIFIYEFSYSQEEAYFIYELINSSVLHRLRLTPDGFSHRTTWSYEKMEWITFFHIPADYCDYYSQCGAYASCNVNRSPKCKCLDKFVQNGTNCVRRTSLNCHEDGFLRYPGLKLPDTDKSWFDRTISLDDCRILCLKNCSCTAYAPLDISNGARGCILWFEGLMDLKELNSSLQDVYVRVAKTELGSIEVHNSNKSNTRHKQDAIIISSTLVSFGALVSCLALIFYKWKTRQRSRNMRRNKETQAGATNDDQHEEDIDLPLFDISAISLATNNFSTDNILGKGGFGLVYKGILEDGREIAVKRRSENSTQGLKEFKNEVKHVSKLQHRNLVKLLGCCIQATERLLIYEFMPNKSLDFFIFDEQKSKLLNWPTRLHIINGIARGLLYLHQDSRHRIVHRDLKAANILLDAEMNPKVSDFGLARSFGGNEVEASTQNVVGTYGYLSPEYVIDGVYSTKSDVFSFGVLVLEIVSGKRNRGFNHQDHHFNLLGHAWRLFTEGKGYEIVCDAIRDTSNISAVLRLIHIGLLCVQQNPDDRPSMSTVVLMLSSEASLPQSKMPGFFTEREMGGDGSSSSSYKVFSNNDFTVSLLEAR 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc93304g00001 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 469 581 - -
Stsc93304g00001 823 CDD PAN_AP_plant 329 413 - -
Stsc93304g00001 823 CDD STKc_IRAK 512 777 - -
Stsc93304g00001 823 Gene3D Phosphorylase Kinase; domain 1 480 581 - -
Stsc93304g00001 823 SMART serkin_6 506 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc93304g00001 823 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Stsc93304g00001 823 Gene3D - 20 152 IPR036426 -
Stsc93304g00001 823 ProSiteProfiles PAN/Apple domain profile. 333 413 IPR003609 -
Stsc93304g00001 823 SUPERFAMILY Protein kinase-like (PK-like) 489 777 IPR011009 -
Stsc93304g00001 823 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 768 - -
Stsc93304g00001 823 Pfam Protein tyrosine and serine/threonine kinase 508 775 IPR001245 GO:0004672|GO:0006468
Stsc93304g00001 823 SMART blect_4 34 155 IPR001480 -
Stsc93304g00001 823 CDD B_lectin 40 155 IPR001480 -
Stsc93304g00001 823 PIRSF SRK 1 823 IPR024171 GO:0004674
Stsc93304g00001 823 Pfam Domain of unknown function (DUF3403) 778 823 IPR021820 GO:0004674
Stsc93304g00001 823 Pfam S-locus glycoprotein domain 213 320 IPR000858 GO:0048544
Stsc93304g00001 823 ProSiteProfiles Bulb-type lectin domain profile. 28 149 IPR001480 -
Stsc93304g00001 823 Pfam PAN-like domain 333 398 IPR003609 -
Stsc93304g00001 823 Gene3D Hepatocyte Growth Factor 329 411 - -
Stsc93304g00001 823 ProSitePatterns Protein kinases ATP-binding region signature. 512 534 IPR017441 GO:0005524
Stsc93304g00001 823 SMART ntp_6 333 412 IPR003609 -
Stsc93304g00001 823 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 186 IPR036426 -
Stsc93304g00001 823 Gene3D Transferase(Phosphotransferase) domain 1 582 788 - -
Stsc93304g00001 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 152 - -
Stsc93304g00001 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 785 - -
Stsc93304g00001 823 Pfam D-mannose binding lectin 76 181 IPR001480 -
Stsc93304g00001 823 ProSiteProfiles Protein kinase domain profile. 506 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc93304g00001 Stsc-Chr93304 2424 5556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc93304g00001 424 807 Receptor kinase-like Gene Family AT4G23190 46.803 1.19e-112 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc93304g00001 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc93304g00001 - - adu:107462372 1516.9