LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc93164g00001	ATGGAGGATCAGGTTCTTGACGAAGAAGAACAAGAACAAGAAGAAGAAGAGAGTGTTGGTTCGAGCTTGACCATGGTGAAGGTCGCTGCTGCCAAGAAGTTCATCGAGAATCACTACAGAACCCACATGAAGAACATTCATGACCGCAAGGAAAGACGTTGGGTTTTAGAAAGAAAATTAGCTTCTTCAGATGTGCCAAATGAGGAACGGATCAGCCTCATCAAAGATTTAGAGAGAAAGGAGACGGAATATATGCGATTGAGAAGGCACAAGATATGTGTTGATGATTTTGAGCTCTTAACAATCATTGGAAGGGGGGCCTATGGAGAGGTCAGACTGTGCCGGGAAAAAAAGTCTGGAAACATTTATGCCATGAAAAAGCTGAAGAAGTCTGAAATGCTCAAGAAAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAACTTGCTGGCTGAAGTAGCCAGTCATTGCATTGTGAAACTATACTACTCATTTCAAGATGCCGAGTACTTGTATTTAATTATGGAGTATCTGCCTGGGGGTGATATGATGACTCTTTTAATTAGGGAAGAAACCTTAAGTGAAGATATTGCTAGATTTTACATTGCACAGAGTGTTCTAGCTATAGAGTCTATTCATAGGCATGGTTACATTCACAGAGATATAAAGCCTGATAACCTACTCTTGGACAAAAATGGTCACATGAAGCTCTCAGATTTTGGCCTCTGTAAGCCTCTTGATTGTACCACCTTGTATACACTGCATGAAAATCAGATCGATGACAGAAATTTAGCAGAGCCAATGGATATTGATGGATCTATTCCTGGCATGGATAAGCATAGCAGTTGGAGAAATCCACGTGAGCAGCTTGAGCATTGGCAGATGAACAGGAGAAAGTTGGCCTTCTCTACAGTGGGAACACCAGACTACATTGCTCCCGAAGTACTTTTGAAGAAAGGATATGGGATGGAATGTGATTGGTGGTCACTGGGAGCAATAATGTATGAAATGCTAGTTGGTTACCCTCCATTTTACTCAGAAAACCCTATGACTACCTGCAGAAAGATTGTTCATTGGAGAAATTTCTTAAGGTTTTCAGAAGAAGTGCAGTTGTCTCCAGAAGCTAAGGATCTAATCTGCAGATTGATGTGTGATGTTGACCATAGATTAGGTACTCGAGGGGCACATGAAATCAAAG	1195	0.4167	MEDQVLDEEEQEQEEEESVGSSLTMVKVAAAKKFIENHYRTHMKNIHDRKERRWVLERKLASSDVPNEERISLIKDLERKETEYMRLRRHKICVDDFELLTIIGRGAYGEVRLCREKKSGNIYAMKKLKKSEMLKKGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLSEDIARFYIAQSVLAIESIHRHGYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCTTLYTLHENQIDDRNLAEPMDIDGSIPGMDKHSSWRNPREQLEHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSENPMTTCRKIVHWRNFLRFSEEVQLSPEAKDLICRLMCDVDHRLGTRGAHEIK	398

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc93164g00001	398	FunFam	Non-specific serine/threonine protein kinase	299	398	-	-
	Stsc93164g00001	398	FunFam	Non-specific serine/threonine protein kinase	58	180	-	-
	Stsc93164g00001	398	FunFam	Non-specific serine/threonine protein kinase	181	248	-	-
	Stsc93164g00001	398	PANTHER	SERINE/THREONINE-PROTEIN KINASE	13	398	-	-
	Stsc93164g00001	398	ProSiteProfiles	Protein kinase domain profile.	97	398	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc93164g00001	398	ProSitePatterns	Protein kinases ATP-binding region signature.	103	126	IPR017441	GO:0005524
	Stsc93164g00001	398	CDD	MobB_NDR_LATS-like	31	92	-	-
	Stsc93164g00001	398	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	216	228	IPR008271	GO:0004672\|GO:0006468
	Stsc93164g00001	398	SMART	serkin_6	97	397	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc93164g00001	398	SUPERFAMILY	Protein kinase-like (PK-like)	94	392	IPR011009	-
	Stsc93164g00001	398	Pfam	Protein kinase domain	98	246	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc93164g00001	398	Pfam	Protein kinase domain	295	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc93164g00001	398	MobiDBLite	consensus disorder prediction	1	17	-	-
	Stsc93164g00001	398	MobiDBLite	consensus disorder prediction	1	22	-	-
	Stsc93164g00001	398	Gene3D	Transferase(Phosphotransferase) domain 1	183	398	-	-
	Stsc93164g00001	398	Gene3D	Phosphorylase Kinase; domain 1	88	182	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc93164g00001	Stsc-Chr93164	16	4681	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc93164g00001	8	398	AGC Kinase Gene Family	AT4G33080	78.117	0.0	650

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Stsc93164g00001		Pkinase	2.3e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc93164g00001	K08790		-	cit:102627835	686.797