Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc93120g00001 ATGATTCCAAGAAAGTTTGTGAGAAAATACGGGGAATGCCTATCAAACAAAGTAGTTCTCAAACTTCCAAATGGCACAGAATGGAAAGTGTATTTGGAGAAACATGATGAAAGAATTTGGTTCCAAAATGGTTGGAAAGAGTTTGTGGAGCATCACTCTCTACAGCATGGGGATCTGTTGGTTTTTAGATTTGAAGGAGCCTCTCATTTTGATGTGACTATATTTGATATGAGTGCCACGGAAATAGACTACCCTGTCAAGAATAAATATGGTAAACGGGCGAACACTACTAGTGAGGAATATCTTCCTTGTAAAACCAAGAGAACTAATGCAAATAACAGAGATGAAGATAAGTTGAAGAATCCACGTAAAGGAAAGATGATCACTGACCTGCTTTCTGAAACGAAACCATCATGTTTCGCAAATTGTGGAACTAAGAAGTTGCGGAAACTACTTCCTTCACAATTACGATCAAAGCAATCAACCAAAGATCCCGCTCTATGGTATGATCAATATACTATTGTGTAA 528 0.3769 MIPRKFVRKYGECLSNKVVLKLPNGTEWKVYLEKHDERIWFQNGWKEFVEHHSLQHGDLLVFRFEGASHFDVTIFDMSATEIDYPVKNKYGKRANTTSEEYLPCKTKRTNANNRDEDKLKNPRKGKMITDLLSETKPSCFANCGTKKLRKLLPSQLRSKQSTKDPALWYDQYTIV 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc93120g00001 175 SMART B3_2 1 78 IPR003340 GO:0003677
Stsc93120g00001 175 PANTHER B3 DOMAIN-CONTAINING 1 136 - -
Stsc93120g00001 175 Gene3D - 1 79 IPR015300 -
Stsc93120g00001 175 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
Stsc93120g00001 175 SUPERFAMILY DNA-binding pseudobarrel domain 1 78 IPR015300 -
Stsc93120g00001 175 CDD B3_DNA 1 76 IPR003340 GO:0003677
Stsc93120g00001 175 Pfam B3 DNA binding domain 1 76 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc93120g00001 Stsc-Chr93120 3289 4407 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc93120g00001 2 84 B3 DNA Binding Superfamily AT3G18990 50.602 3.59e-24 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc93120g00001 B3 7.7e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc93120g00001 - - aprc:113849508 155.992