Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc93099g00001 ATGGCGAATCGATGGTGGGCTGGGAATGTGGCCATGAGGCCAACCGACTCAATCTCACCCTCGCCATCACTTCACCTAAGAAGAGAGCAGGAGTTCTTGGATACTCCCAACAACAACACTCCAACAAACAGCAGCAACAGCAATACCAACCCCAACACCGAAGAGGATGACAGCAGAGACACTGGTGGTGCCGCTGGAGGAGACGATAACAACCCACCAAGCGCTGGAACCAACGGAAGAAGGCCACGTGGCAGGCCTCCCGGATCCAAGAACAAGCCCAAACCCCCCATCGTCATTACCAAAGACACTCCCAACGCACTCCGCAGCCATGTTCTTGAGATCAGCAGCGGCAGCGACGTCGCAGAGAGCATCGCCACCTTCGCCAACCGCCGCCACCGCGGTGTGTCGGTCCTCAGCGGAAGCGGCATTGTTGCAAACGTCACGCTCCGCCAACCGGCTGCTCCCGGTGGCGTCATCACTCTCCATGGAAGGTTCGAGATACTCTCACTCAACGGTGCCTTCCTTCCCGCTCCTTCTCCTCCCGGCGCCACCGGACTCACCGTTTACCTGTCCGGCGGTCAGGGTCAGGTGGTTGGCGGAACTGTTGTGGGGTCTTTGGTGGCTTCCGGTCCTGTAATGGTGATTGCTGCAACCTTCGCCAATGCTACTTATGAGCGCTTACCGCTTGTGGAAGATGAACAAGCTGAAGAAGAAATGCAAGTGCAGCAGCAGCAGCAGCAACATTCAGGAGGAGTGAGTGGCGGTGGTACTGGTGCTGGTGCTGGTGCTGGTGGTGGAACTCCTCAGGGTGGTGGTGGTAGTGGAGGTTCTTCTTCTCAAGGTGGTGGGTTGGGTGAGGGTGGTGGTTCCGTGGGAATGTACAATTTGGCACCGAATTTGATGCACAACGGTCAATTGGCGGCACATGATGTTTTCTGGGGGCCTCCACCGCCTCGTCCTCCGCAGCCTCCTTCTTTCTAA 981 0.5739 MANRWWAGNVAMRPTDSISPSPSLHLRREQEFLDTPNNNTPTNSSNSNTNPNTEEDDSRDTGGAAGGDDNNPPSAGTNGRRPRGRPPGSKNKPKPPIVITKDTPNALRSHVLEISSGSDVAESIATFANRRHRGVSVLSGSGIVANVTLRQPAAPGGVITLHGRFEILSLNGAFLPAPSPPGATGLTVYLSGGQGQVVGGTVVGSLVASGPVMVIAATFANATYERLPLVEDEQAEEEMQVQQQQQQHSGGVSGGGTGAGAGAGGGTPQGGGGSGGSSSQGGGLGEGGGSVGMYNLAPNLMHNGQLAAHDVFWGPPPPRPPQPPSF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc93099g00001 326 MobiDBLite consensus disorder prediction 1 101 - -
Stsc93099g00001 326 Gene3D - 107 250 - -
Stsc93099g00001 326 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 41 314 IPR014476 GO:0003680
Stsc93099g00001 326 MobiDBLite consensus disorder prediction 33 52 - -
Stsc93099g00001 326 CDD DUF296 108 191 IPR005175 -
Stsc93099g00001 326 MobiDBLite consensus disorder prediction 233 297 - -
Stsc93099g00001 326 MobiDBLite consensus disorder prediction 239 253 - -
Stsc93099g00001 326 FunFam AT-hook motif nuclear-localized protein 107 235 - -
Stsc93099g00001 326 Pfam Plants and Prokaryotes Conserved (PCC) domain 108 220 IPR005175 -
Stsc93099g00001 326 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 230 - -
Stsc93099g00001 326 ProSiteProfiles PPC domain profile profile. 104 240 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc93099g00001 Stsc-Chr93099 808 1788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc93099g00001 1 326 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 50.430 2.71e-72 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc93099g00001 - - qsa:O6P43_020634 299.286