Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc93038g00001 ATGGACAATGGTGGCAATGCGTTGGACTTCGGTAATCTGAAAGTGGTCTCCGCCTTGGGACGCGGTGCCAAGGGCTTGGTTTTCTTGGCGAAAACCTATGAAGGGCAATGGCTGGCGTTGAAGGTGGTCTCAAAAGCTTTGATTCGGATGAGGAATAGCAGCCATCGCAAGAGGGTGTCGTTCGAACAACAAATACTGCGTCGTTTTAATCACCCTCTCTTGCCACGCTTGCGAGGGGTCTTGGAAACCGAGGAGCTCTTAGGGTTTGCCATTGACTTTTGCCACGGCGGTAACTTACATTCTCTTAGGAGGAAACAATCTGAGAAGACGTTCACCGTTGATGCCATAAGGTTTTACGCTGTGGAATTGGTCACAGCATTGGACTACTTGCACAATATTGGAGTAGTGTACCGAGATTTGAAGCCAGAGAACATACTGATCCAAGAAAGTGGTCACATAATGCTCGTGGATTTTGATCTCTCCAAGAAGCTGAACCCAAAGTCACCTCAATCGGTGAGTGCCATGTCATCGCCAAGTTCTGACTCAGCACTGCTGCTTGACCGAAGGAAGCGATTGTTACCGGGTTTCTGTTATTGTCACTCGGGTGTCATACCCCTCGATTCGGACAGTCAACTCGGCATGAACTCACCGGCTCGGAGCGAGTCGGACTCAGTGGAGAAATCCAACTCGTTTGTGGGAACAGAGGATTACGTGTCACCAGAGATTATAACCGGTGAGGGACACAACTTTAGTGCTGATTGGTGGTCCCTAGGTGTTGTTTTGTACGAGATGTTGTACGGAATGACACCGTTTAAGGGCGTAAATAGAAAGAACACATTTCAACGGATCTTGACAAAGCAACCGGATCTAACAGGTGAAACGACACCGTTGAAGGACCTGATCAAGAAGTTGCTTGAAAAGCATCCGGACCGTAGGATTGAGGTAGATGAAATCAAGTGCCATGATTTCTTCAAGGGTGTGAACTGGAACTCTGTTTTGCAAATTGCGCGTCCACCGTATATTCCTCAGAATGACATTGAGGACAAAGCAGGGTTTTCAAGGAAAGACGTAGAGTCATTTGTTCATAAAGTATTTTTCAAGAATGACAGTCATAAGGAAGATAAGACCAAAGAAACCGAGAAAAAGAAAATTAATGGTGCAAATCGGAATAATATTTATGACAAGAATCAAAATACGGTGTGGGTCAACAAATTGACTGAAAAACCTACTAAAAACGGAGACTTCTTAGTGTTTTGA 1257 0.4543 MDNGGNALDFGNLKVVSALGRGAKGLVFLAKTYEGQWLALKVVSKALIRMRNSSHRKRVSFEQQILRRFNHPLLPRLRGVLETEELLGFAIDFCHGGNLHSLRRKQSEKTFTVDAIRFYAVELVTALDYLHNIGVVYRDLKPENILIQESGHIMLVDFDLSKKLNPKSPQSVSAMSSPSSDSALLLDRRKRLLPGFCYCHSGVIPLDSDSQLGMNSPARSESDSVEKSNSFVGTEDYVSPEIITGEGHNFSADWWSLGVVLYEMLYGMTPFKGVNRKNTFQRILTKQPDLTGETTPLKDLIKKLLEKHPDRRIEVDEIKCHDFFKGVNWNSVLQIARPPYIPQNDIEDKAGFSRKDVESFVHKVFFKNDSHKEDKTKETEKKKINGANRNNIYDKNQNTVWVNKLTEKPTKNGDFLVF 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc93038g00001 418 SMART serkin_6 13 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc93038g00001 418 Gene3D Transferase(Phosphotransferase) domain 1 98 343 - -
Stsc93038g00001 418 SUPERFAMILY Protein kinase-like (PK-like) 9 356 IPR011009 -
Stsc93038g00001 418 Pfam Protein kinase domain 226 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc93038g00001 418 Pfam Protein kinase domain 15 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc93038g00001 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Stsc93038g00001 418 Gene3D Phosphorylase Kinase; domain 1 15 353 - -
Stsc93038g00001 418 ProSiteProfiles Protein kinase domain profile. 13 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc93038g00001 418 ProSiteProfiles AGC-kinase C-terminal domain profile. 325 418 IPR000961 GO:0004674|GO:0005524|GO:0006468
Stsc93038g00001 418 PANTHER FLIPPASE KINASE 1-RELATED 8 349 - -
Stsc93038g00001 418 FunFam Serine/threonine-protein kinase OXI1 98 166 - -
Stsc93038g00001 418 FunFam Serine/threonine-protein kinase OXI1 226 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc93038g00001 Stsc-Chr93038 1937 3945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc93038g00001 7 418 AGC Kinase Gene Family AT3G25250 51.537 1.62e-141 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Stsc93038g00001 Pkinase 3.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc93038g00001 K20714 - gmx:100813693 501.13