Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92987g00001 ATGTCTCAGCAGCTCTTTCAGAAACCACATAACAACCGAGAAGACCATGCGCAGCAGCATCAGCATCAGCAGCACACTTATCAGGATGCACTTTTAGTTCAGAGTGACCAGCTCCACCAAAGGCAACACTCTAGTTTGCCTTCACCATCGTACTCGAAACCCGAGTTTGCAGATTCAAGCATTAAGTTTGAAGGATCAGGTTCACCAGGACAGAACATGCTTGGTTCACTTTGTCCTGAAGGGAGCAGCAATCTCTTGAACTTATCTAGAGGTGGTCAGTCTATACCAACAGAACAGTTATCCCAACAATCGTGGCCCCCGAAGTATACACCTCTGCAGGTCAATGCTTTTGCCAACTCAATGTCACATGTGCAATATTCTGGAAAAGATATTGCAGTGGCATCACCACATTGTAATTCAGATGCTCAGAATCCAACTCTCTTTGGAGTCAATATCGATTCGTCTGGTCTTCTACTCCCCACCACTGTCCCCCATTACACCACTTCGTCTGCTGATACCGATGCTTCAACAATGCCATTAGGGGATTCTGGATTCCAGGGCCCTCTGTATGCTTGCATGCAAGAGTCATCGGAGTTAATGCAAAGTGCGGGACAAGTTGACCCTCAGAACCAGACACCGACGTTTGTCAAGGTTTATAAATCAGGGTCAGTTGGGCGCTCACTTGACATCTCTCGGTTCAGCAGCTATCATGAACTGCGAGAAGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCATCGACAGGGAGAATGATATTCTTCTCCTTGGGGACGATCCGTGGGAATCATTTGTCAACAATGTTTGGTATATCAAAATCCTTTCACATGAAGATATTCAGAAGATGGGAGAAGCTGTAGAATCTCGTGACGGTGTTCCTGGCCTACCATCAATAGGCGAATACTGA 963 0.4631 MSQQLFQKPHNNREDHAQQHQHQQHTYQDALLVQSDQLHQRQHSSLPSPSYSKPEFADSSIKFEGSGSPGQNMLGSLCPEGSSNLLNLSRGGQSIPTEQLSQQSWPPKYTPLQVNAFANSMSHVQYSGKDIAVASPHCNSDAQNPTLFGVNIDSSGLLLPTTVPHYTTSSADTDASTMPLGDSGFQGPLYACMQESSELMQSAGQVDPQNQTPTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFIDRENDILLLGDDPWESFVNNVWYIKILSHEDIQKMGEAVESRDGVPGLPSIGEY 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92987g00001 320 SUPERFAMILY CAD & PB1 domains 211 287 - -
Stsc92987g00001 320 MobiDBLite consensus disorder prediction 23 55 - -
Stsc92987g00001 320 MobiDBLite consensus disorder prediction 64 107 - -
Stsc92987g00001 320 MobiDBLite consensus disorder prediction 1 107 - -
Stsc92987g00001 320 FunFam Auxin response factor 208 302 - -
Stsc92987g00001 320 Pfam AUX/IAA family 205 298 IPR033389 -
Stsc92987g00001 320 ProSiteProfiles PB1 domain profile. 213 297 IPR000270 GO:0005515
Stsc92987g00001 320 Gene3D - 209 302 - -
Stsc92987g00001 320 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 302 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92987g00001 Stsc-Chr92987 4300 5925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92987g00001 25 311 B3 DNA Binding Superfamily AT5G37020 56.552 1.06e-97 301