Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92972g00001 ATGGCAGCCATGAACTCCTCTAGTGTATTGGCTTGCAGCTACGCCATTTCGGGAGGGGCTTCTAGTTCCGAGCTCACTGGCAAGATTACTTGCTTGCCCTCTGTCTCCAGCAACAAGTTCCCTGTGATGAAGGTGAAGGCCCAGCAAGAGAGAACAACCCCCAAAGCCATGAAAGAATCTGAAATGGGAACAAGAAGAACTGCTCTTGTTTACTTGGCAGCCGCACTTTTCAGCTCTGCTGCTGCTTCTTCTGCCAATGCTGGTGTCATTGAAGATTACCTTGAGAAGAGCAAGGCCAACAAGGAATTGAATGACAAGAAAAGATTAGCTACCAGTGGAGCAAATTTTGCAAGAGCATACACAGTCCAATTTGGCACTTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGAAAGTGCCATTCCTTTCTGATGATTTGGAGCTTGAATGTGAAGGAAAAGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGGGAAACTGA 525 0.4552 MAAMNSSSVLACSYAISGGASSSELTGKITCLPSVSSNKFPVMKVKAQQERTTPKAMKESEMGTRRTALVYLAAALFSSAAASSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFLSDDLELECEGKDKYKCGSNVFWKWGN 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92972g00001 174 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 172 IPR008796 GO:0009522|GO:0015979
Stsc92972g00001 174 Gene3D - 88 172 IPR044907 -
Stsc92972g00001 174 FunFam Photosystem I reaction center subunit N 88 172 - -
Stsc92972g00001 174 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 45 172 IPR008796 GO:0009522|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92972g00001 Stsc-Chr92972 5436 6657 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92972g00001 1 143 Calmodulin-binding Proteins AT5G64040 64.189 3.02e-50 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92972g00001 K02701 - pop:7466843 234.187