Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92937g00001 ATGTCTAAGACTCAAGAGAAGGATCAAGGTATCATGCTATTTGGAAGGAAGATTCCATTATTGCCTGAATCTCAGATTCCAGCCATCTCTAGAGACATCATGGACCCAAAACAAGAAAAGAATTCTTCAGATTCAATGGATGATAATAATAATAATAATAAAAAAGGTAATTCCCAACATAACGATGAAGCAACAACAACAGTAAATTCCAACAACCATGTAGAAGAAAATGTCACAAATGAAGAAGAAGAAGATGATCACAAAACCATGAAGAAACCAGACAAGATTATTCAGTGTCCAAGATGCAAGAGCATGGACACAAAATTCTGCTACTTCAACAACTACAACGTCAACCAACCCCGCCATTTCTGCAAGAACTGCCAGCGCTATTGGACCGCCGGCGGAACAATGAGGAATGTCCCCATTGGCGCCGGCAGACGCAAGCACAAGAACTTGGCTTCGCAGTTCCGCACTGTCCTAGTAGCTGCGGCCGCCGCCGCAGCCACCGGAGTTCCAGAACCCACAAACTCATCGTCAAAAGAAAATAATAATAGCAACAATGGAAGTGGCGGTACGGTTTTGAAATTCGGTCACGAAAATTTATCTATCAATTATTGTCATGAATATGGGGAGGAATCATCATCATCATCGTTGATGTATGAATCATCTTCAGAACACAACAACAACAACGTTAACCACGAGGCATCAAAATTGTTGCAATGTTACCCTGTTGTTCCTCCATGGGTTATGCCTTGGAATAATGTTGTTCCACAACATCATCATGGTCCAAATTCAATTCAATGGTGTCCAACACCAATGGCGGCGGTGGCAGCTACAATTCCTGTTCATCTTGTTCCAGGGCCATACTGGGGTGGATCACCTATGTGGGGTGCACCAATAGGATCCAATCATAGCCGTTCATCGCCTTCTTCGTCCACTAGTAACAATAGCTCCTGTTCTGGCAATGCTAACAATAATTCCCCAATACTTGGCAAGCACAAAAGGGATCAAAGCACTGTTTTCATTGATGAACAGAAACAAAGTAAGTGTTTCTTGGTTCCAAAGATTCCAACAAGAATTGATGAGTCAAATAACAATGAGGGTTCAGTGAGCCCTATTTGGGCTACATTGGCCATGATACAGGATAACAATGCTTTGAAGAAAATAGCAGCTAAAGGAGATCAAGGCAAAGAGAGTTTATTGCATGTGACTGAAATCTTGGAAGCCAATCCAACACCTGTTTCTCATGCTCATGCATGCAACGAATTCTCTGATGATGCATTTTAA 1287 0.4204 MSKTQEKDQGIMLFGRKIPLLPESQIPAISRDIMDPKQEKNSSDSMDDNNNNNKKGNSQHNDEATTTVNSNNHVEENVTNEEEEDDHKTMKKPDKIIQCPRCKSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKHKNLASQFRTVLVAAAAAAATGVPEPTNSSSKENNNSNNGSGGTVLKFGHENLSINYCHEYGEESSSSSLMYESSSEHNNNNVNHEASKLLQCYPVVPPWVMPWNNVVPQHHHGPNSIQWCPTPMAAVAATIPVHLVPGPYWGGSPMWGAPIGSNHSRSSPSSSTSNNSSCSGNANNNSPILGKHKRDQSTVFIDEQKQSKCFLVPKIPTRIDESNNNEGSVSPIWATLAMIQDNNALKKIAAKGDQGKESLLHVTEILEANPTPVSHAHACNEFSDDAF 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92937g00001 428 MobiDBLite consensus disorder prediction 45 75 - -
Stsc92937g00001 428 MobiDBLite consensus disorder prediction 301 332 - -
Stsc92937g00001 428 ProSitePatterns Zinc finger Dof-type signature. 99 135 IPR003851 GO:0003677|GO:0006355
Stsc92937g00001 428 MobiDBLite consensus disorder prediction 1 92 - -
Stsc92937g00001 428 MobiDBLite consensus disorder prediction 170 192 - -
Stsc92937g00001 428 MobiDBLite consensus disorder prediction 171 192 - -
Stsc92937g00001 428 ProSiteProfiles Zinc finger Dof-type profile. 97 151 IPR003851 GO:0003677|GO:0006355
Stsc92937g00001 428 PANTHER CYCLIC DOF FACTOR 2 1 422 IPR045174 GO:0003700|GO:0006355
Stsc92937g00001 428 Pfam Dof domain, zinc finger 94 151 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92937g00001 Stsc-Chr92937 1327 3947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92937g00001 5 422 C2C2-Dof Transcription Factor Family AT3G47500 31.809 8.48e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc92937g00001 zf-Dof 5.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92937g00001 - - ahf:112696882 444.891