Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92871g00004 ATGAAGATGAAGACATTACATACATACACATCAAGAGAAGCATCAAGCATGTACCAATATGTGTACGGAAGTAGTCATGAGTGTTGGGAACAAGATCAGAGTTATGAGCCTTACTTCAGACCACAGTATGATGAGGTTCCTTTTGCTGCTTGGAACTTTAATGCAGTAGTTGAGTCTTCTTCTTTATTGTGTAGTAGTAGCAGTAGTAGTGCAGATAGCTATTCCTCTTCTCAGAAATGCAAAAATGTTCCTTCTTCATACTCTCATGAGAAGAACAATAATACTAGTGATTTTCAGCCTCCTCTTCCTCCTGCTGCTGCTGCTAATGATGTGTTAATCTTCCATCAACAGTATCCACAACAATATCATGATGATGATGATGCTACAGATCATAAGAAGCCCAGCCCCCTCCAAATTTGCTTCCAAAAGAATCAGACAGAAAAGCAAGACTATGTGATGAGTGGTTGTAGCAACTCTGGTTATAGGAGAGGTCCATCATCATCATCATCAGTTAAAAGAAGAGTAAGATGGACCAAAGATCTGCATGAGCCATTCATGACGGTTGTTAATCGCCTTGGTGGTCCTCATAAGGCAAAGCCTAAGGCTATATTAGACATGATGAAATCAGATTTGTTGTCAATTACACACATTAAAAGTCACTTGCAGAAATACAGGTCTACAATATGCCACCACAAAGCTTCTTCGCATGAAAGATCGTTTGAGGAAGGAGATAAAACAGATGTCACTCATCTTCAACACAAAATACAAATGCAAATTGAGGAATCACAACAACTTCAACAAGAGGTCCGCAGGAGTATTCATCAACAACTAGAGATGCAACGAAATTTGCAAGTGCTGATTGAACAGCAAAGGGAGCAGCTCAAGATGATGTTAGAACAACAAAAGGAAAGAACCAAAATGGGAAAGAAATTAAATAACCCTTAG 945 0.3905 MKMKTLHTYTSREASSMYQYVYGSSHECWEQDQSYEPYFRPQYDEVPFAAWNFNAVVESSSLLCSSSSSSADSYSSSQKCKNVPSSYSHEKNNNTSDFQPPLPPAAAANDVLIFHQQYPQQYHDDDDATDHKKPSPLQICFQKNQTEKQDYVMSGCSNSGYRRGPSSSSSVKRRVRWTKDLHEPFMTVVNRLGGPHKAKPKAILDMMKSDLLSITHIKSHLQKYRSTICHHKASSHERSFEEGDKTDVTHLQHKIQMQIEESQQLQQEVRRSIHQQLEMQRNLQVLIEQQREQLKMMLEQQKERTKMGKKLNNP 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92871g00004 314 Coils Coil 248 268 - -
Stsc92871g00004 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 169 229 IPR017930 -
Stsc92871g00004 314 MobiDBLite consensus disorder prediction 154 173 - -
Stsc92871g00004 314 MobiDBLite consensus disorder prediction 69 100 - -
Stsc92871g00004 314 Coils Coil 280 304 - -
Stsc92871g00004 314 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 156 305 IPR044848 GO:0003700
Stsc92871g00004 314 Pfam Myb-like DNA-binding domain 174 225 IPR001005 -
Stsc92871g00004 314 SUPERFAMILY Homeodomain-like 171 227 IPR009057 -
Stsc92871g00004 314 Gene3D - 171 228 - -
Stsc92871g00004 314 NCBIfam myb-like DNA-binding domain, SHAQKYF class 172 226 IPR006447 GO:0003677
Stsc92871g00004 314 MobiDBLite consensus disorder prediction 154 172 - -
Stsc92871g00004 314 MobiDBLite consensus disorder prediction 69 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92871g00004 Stsc-Chr92871 5196 7217 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92871g00004 165 303 G2-like Transcription Factor Family AT3G04450 42.254 6.99e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc92871g00004 Myb_DNA-binding 9.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92871g00004 - - aip:107647908 359.377