Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92871g00002 ATGATTCAACAAAGCCATGGTCATGGAGGACTAAATGCTGATGATTTTGGTTACTTTGATACCACACACTCCTGGAACATGCCTGCAGGAGGATCACAGCCACTGCCACCACAAATAGGCCCTGCCACCACCATCTTGAGCCGGTTCGAGTCGCCGGCTACTGCCTTCTATGCAGCAGAATTCTGCATGGGGTTTGCAGAATATGAACAGTCTCAGACTCAGTTGTCTAAGATGAACAATAGTGATTTGGAGTTCCCTTTGTATCAGAGGGACAACTTTGATCTCTCCAACACTTTGCAAGCAATGGTGAATAATTCTCAATTCAGTACTAATCAAGTTCCATCATCCAACAAAATCCCATGTGCCAATTTTTCTTCAATCAAGTTCCATCACCACCACCAACAAAAGTTCTTCACTGATGCCATGGCTTCACCATTTCCCAACAAAGGAAATCAAGATCATATACAGGTGAGCTTCACTTCTTATCAAGATAGGTCTCCAACAACACCTTGTTCAGGAGGAAGTGTATCAGGAAACTCAGCCTCTAGTGGAGTAACTGTATCGAGTAAAACGCGTATAAGATGGACTCAGGATCTTCATGACAAGTTTGTTGAATGTGTGAATCGCCTTGGTGGTGCTGATAAGGCCACACCAAAGAATGTCTTGAAGATGATGGATTCAGATGGATTAACCATCTTTCATGTCAAAAGCCATTTGCAGAAATATAGAATTGCAAAGTACATGCCTGAGGCAACTCATAATAATGGAAAATCTGAGAAAAGAATCCGCATAGAGGATGTTCAACATCAGCATCTTGATATGAAAAATGGAATTCAAATTAGAGAAGCACTTCAACAGCAATTAGATGCTCAAAAGCTTCTTCATGAACAGCTAGAGAATCAGAGAAAGTTGCAGCTGCGAATTGAGGAACAAGGTAGGCAGTTGAAGGAGATGTTTGATCAGCAGCAAAAGGCAACCAATGACCTTTTCAATTCTCATCACAACATAACCAATGACTAA 1020 0.4157 MIQQSHGHGGLNADDFGYFDTTHSWNMPAGGSQPLPPQIGPATTILSRFESPATAFYAAEFCMGFAEYEQSQTQLSKMNNSDLEFPLYQRDNFDLSNTLQAMVNNSQFSTNQVPSSNKIPCANFSSIKFHHHHQQKFFTDAMASPFPNKGNQDHIQVSFTSYQDRSPTTPCSGGSVSGNSASSGVTVSSKTRIRWTQDLHDKFVECVNRLGGADKATPKNVLKMMDSDGLTIFHVKSHLQKYRIAKYMPEATHNNGKSEKRIRIEDVQHQHLDMKNGIQIREALQQQLDAQKLLHEQLENQRKLQLRIEEQGRQLKEMFDQQQKATNDLFNSHHNITND 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92871g00002 339 SUPERFAMILY Homeodomain-like 188 244 IPR009057 -
Stsc92871g00002 339 Gene3D - 189 248 - -
Stsc92871g00002 339 MobiDBLite consensus disorder prediction 162 183 - -
Stsc92871g00002 339 Pfam MYB-CC type transfactor, LHEQLE motif 278 325 IPR025756 -
Stsc92871g00002 339 Coils Coil 281 301 - -
Stsc92871g00002 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 181 328 IPR044848 GO:0003700
Stsc92871g00002 339 FunFam Myb family transcription factor 189 247 - -
Stsc92871g00002 339 Pfam Myb-like DNA-binding domain 194 243 IPR001005 -
Stsc92871g00002 339 NCBIfam myb-like DNA-binding domain, SHAQKYF class 190 245 IPR006447 GO:0003677
Stsc92871g00002 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 247 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92871g00002 Stsc-Chr92871 2472 4350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92871g00002 188 322 G2-like Transcription Factor Family AT4G28610 56.296 1.18e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc92871g00002 Myb_DNA-binding 4.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92871g00002 - - gmx:100527257 328.176