Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92871g00001 ATGCCAGCTTGCAAATTAAAAGCACCAAAAATAAGAATGATTCAACAAAGCCATGGTCATGGAGGACTAAATGCTGATGATTTTGGTTACTTTGATACCACACACTCCTGGAACATGCCTGCAGGAGGATCACAGCCACTGCCACCACAAATAGGCCCTGCCACCACCATCTTGAGCCGGTTCGAGTCGCCGGCTACTGCCTTCTATGCAGCAGAATTCTGCATGGGGTTTGCAGAATATGAACAGTCTCAGACTCAGTTGTCTAAGATGAACAATAGTGATTTGGAGTTCCCTTTGTATCAGAGGGACAACTTTGATCTCTCCAACACTTTGCAAGCAATGGTGAATAATTCTCAATTCAGTACTAATCAAGTTCCATCATCCAACAAAATCCCATGTGCCAATTTTTCTTCAATCAAGTTCCATCACCACCACCAACAAAAGTTCTTCACTGATGCCATGGCTTCACCATTTCCCAACAAAGGAAATCAAGATCATATAGTGAGCTTCACTTCTTATCAAGATAGGTCTCCAACAACACCTTGTTCAGGAGGAAGTGTATCAGGAAACTCAGCCTCTAGTGGAGTAACTGTATCGAGTAAAACGCGTATAAGATGGACTCAGGATCTTCATGACAAGTTTGTTGAATGTGTGAATCGCCTTGGTGGTGCTGATAAGGCCACACCAAAGAATGTCTTGAAGATGATGGATTCAGATGGATTAACCATCTTTCATGTCAAAAGCCATTTGCAGAAATATAGAATTGCAAAGTACATGCCTGAGGCAACTCATAATAATGGAAAATCTGAGAAAAGAATCCGCATAGAGGATGTTCAACATCAGCATCTTGATATGAAAAATGGAATTCAAATTAGAGAAGCACTTCAACAGCAATTAGATGCTCAAAAGCTTCTTCATGAACAGCTAGAGAATCAGAGAAAGTTGCAGCTGCGAATTGAGGAACAAGGTAGGCAGTTGAAGGAGATGTTTGATCAGCAGCAAAAGGCAACCAATGACCTTTTCAATTCTCATCACAACATAACCAATGACTAA 1053 0.4122 MPACKLKAPKIRMIQQSHGHGGLNADDFGYFDTTHSWNMPAGGSQPLPPQIGPATTILSRFESPATAFYAAEFCMGFAEYEQSQTQLSKMNNSDLEFPLYQRDNFDLSNTLQAMVNNSQFSTNQVPSSNKIPCANFSSIKFHHHHQQKFFTDAMASPFPNKGNQDHIVSFTSYQDRSPTTPCSGGSVSGNSASSGVTVSSKTRIRWTQDLHDKFVECVNRLGGADKATPKNVLKMMDSDGLTIFHVKSHLQKYRIAKYMPEATHNNGKSEKRIRIEDVQHQHLDMKNGIQIREALQQQLDAQKLLHEQLENQRKLQLRIEEQGRQLKEMFDQQQKATNDLFNSHHNITND 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92871g00001 350 Coils Coil 292 312 - -
Stsc92871g00001 350 MobiDBLite consensus disorder prediction 173 195 - -
Stsc92871g00001 350 Pfam Myb-like DNA-binding domain 205 254 IPR001005 -
Stsc92871g00001 350 SUPERFAMILY Homeodomain-like 199 255 IPR009057 -
Stsc92871g00001 350 Gene3D - 200 259 - -
Stsc92871g00001 350 NCBIfam myb-like DNA-binding domain, SHAQKYF class 201 256 IPR006447 GO:0003677
Stsc92871g00001 350 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 195 339 IPR044848 GO:0003700
Stsc92871g00001 350 FunFam Myb family transcription factor 200 258 - -
Stsc92871g00001 350 Pfam MYB-CC type transfactor, LHEQLE motif 289 336 IPR025756 -
Stsc92871g00001 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 258 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92871g00001 Stsc-Chr92871 2353 4350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92871g00001 199 333 G2-like Transcription Factor Family AT4G28610 56.296 2.28e-45 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc92871g00001 Myb_DNA-binding 4.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92871g00001 - - gmx:100527257 332.798