LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc92865g00001	ATGGAAAAGAGACAAGGGAACACAGCTTTCTTCTTCTTCTTCATGTGGACTATTTCTTCAGTTACTGCTTTGCTTTCTTCTAAAGGTGTCAATTATGAAGTTGTAGCTTTGATAGAGTTGAAGAGCAATCTAAAGGATCCTCGTAATGTTCTTAGTAATTGGGATTATAATGCTGTTGATCCTTGCAGTTGGGCCATGGTTTCTTGCTCTTCTGATCGTTTTGTTGCTACTCTAGCAATTCCAAGCCAAAATTTATCCGGTACACTTTCACCAAGCATAGGAAACTTAACAAACCTTCAGACAGTGCTATTGCAAGAGAATAATATAACAGGACCAGTACCCTCTGAGATTGGGAAGCTACAAAAGCTTCAAACTCTTGATCTTTCTGAGAACTCTTTCACTGGTCAACTTCCAGATTCTCTGTCCCATATGAATGGTCTCCAATATTTGCGGTTAAATAACAACAGTCTCTATGGAGCAATTCCTTCCTCTTTGACTGATATGTCCCAGCTCGCCTTTCTGGACATCTCTTACAATAACTTAAGTGGACCTGTACCTAGAATAAATGCAAAAACATTCAGTATTATAGGCAATCCCCAAATATGTAATAACAAAGGACTCGAGCAGAACTGTTTCAAAACAACACTGATTCCTTCTGCCATGAATAGTTCTCAAGATTCACAATCCTCCAATGGCATAAAGAGCCACAAAATGGGCTTAGCGGTTGCTTCAAGCCTAAGCTGCATCTGCTTACTAATTCTTGGGTTCGGATTCCTCCTTTGGTGGAGACAAAGATATAACAAGCAAATATTCTTTGATGTTAATGTTTCAGAACAACAACACGAAGAGGTATGCCTGGGTAACCTGAAGAAGTTCCATTTCAGAGAACTTCAAGTTGCAACAAACAATTTCAGCAGCAAGAACTTGGTTGGTAAAGGTGGCTTTGGAAATGTGTACAAAGGGTACCTTCAAGACGGTACAGCCATAGCAGTGAAGAGGCTGAAAGATGGTAATGCCATTGGAGGTGAGATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCTGTTCACCGGAATCTCCTTCGCCTTTATGGATTTTGCATGACAGCAACTGAGAGGCTCTTGGTTTACCCCTACATGTCCAACGGCAGTGTCGCTTACCGTCTCAAAGCGAACCCAGCACTAGATTGGATCACAAGGAAGAGGATAGCAATAGGAGCTGCACGGGGATTGCTATATCTGCATGAGCAGTGTGATCCAAAGATTATTCATAGGGACGTGAAAGCTGCAAACATCTTGCTGGATGATTACTGTGAGGCAGTTGTAGGAGATTTTGGACTCGCAAAGTTGTTGGATCACCAAGATTCACACGTCACCACGGCGGTTAGAGGGACTGTAGGGCACATAGCCCCTGAGTATCTCTCAACTGGCCATTCCTCTGAGAAAACTGATGTCTTTGGCTTTGGAATCCTTCTTCTTGAGCTCATTTCTGGCCAAAGAGCCCTTGAATTTGGCAAAGCAGCAAACCAGAAAGGAGCTATGCTTGATTGGGTGAAGAAGATCCATATAGAGAAGAAAATAGACTTGCTAGTTGACAAGGAACTGAAGAACAACTATGATAGGATTGAGCTTGATGAGATTGTTCAAGTAGCTTTGTTATGCACTCAATACCTTCCAAGCCATAGGCCAAAGATGTCTGAGGTGGTTAGGATGCTTGAAGGAGATGGTCTTGCTGAGAAATGGGAAGCCTCACAGAGGGCAGAGTCCACTCAAAGCAGAGGGAATGAACTCTCTTCCTCCGAGCGATATTCCGATCTCACTGATGACTCTTCATTGCTTGCCCAAGCAATGGAACTTTCCGGACCCAGATGA	1875	0.4288	MEKRQGNTAFFFFFMWTISSVTALLSSKGVNYEVVALIELKSNLKDPRNVLSNWDYNAVDPCSWAMVSCSSDRFVATLAIPSQNLSGTLSPSIGNLTNLQTVLLQENNITGPVPSEIGKLQKLQTLDLSENSFTGQLPDSLSHMNGLQYLRLNNNSLYGAIPSSLTDMSQLAFLDISYNNLSGPVPRINAKTFSIIGNPQICNNKGLEQNCFKTTLIPSAMNSSQDSQSSNGIKSHKMGLAVASSLSCICLLILGFGFLLWWRQRYNKQIFFDVNVSEQQHEEVCLGNLKKFHFRELQVATNNFSSKNLVGKGGFGNVYKGYLQDGTAIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTATERLLVYPYMSNGSVAYRLKANPALDWITRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGHSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAMLDWVKKIHIEKKIDLLVDKELKNNYDRIELDEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTQSRGNELSSSERYSDLTDDSSLLAQAMELSGPR	624

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc92865g00001	624	FunFam	Somatic embryogenesis receptor-like kinase 1	381	593	-	-
	Stsc92865g00001	624	FunFam	Somatic embryogenesis receptor kinase 1	271	380	-	-
	Stsc92865g00001	624	SMART	serkin_6	304	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc92865g00001	624	Gene3D	Transferase(Phosphotransferase) domain 1	381	593	-	-
	Stsc92865g00001	624	Pfam	Leucine rich repeat N-terminal domain	31	70	IPR013210	-
	Stsc92865g00001	624	Gene3D	Ribonuclease Inhibitor	30	212	IPR032675	-
	Stsc92865g00001	624	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	12	584	-	-
	Stsc92865g00001	624	MobiDBLite	consensus disorder prediction	585	612	-	-
	Stsc92865g00001	624	Gene3D	Phosphorylase Kinase; domain 1	272	380	-	-
	Stsc92865g00001	624	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	30	213	-	-
	Stsc92865g00001	624	ProSitePatterns	Protein kinases ATP-binding region signature.	310	332	IPR017441	GO:0005524
	Stsc92865g00001	624	SUPERFAMILY	L domain-like	32	195	-	-
	Stsc92865g00001	624	MobiDBLite	consensus disorder prediction	583	612	-	-
	Stsc92865g00001	624	Pfam	Protein kinase domain	305	571	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc92865g00001	624	ProSiteProfiles	Protein kinase domain profile.	304	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc92865g00001	624	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	423	435	IPR008271	GO:0004672\|GO:0006468
	Stsc92865g00001	624	Pfam	Leucine rich repeat	97	157	IPR001611	GO:0005515
	Stsc92865g00001	624	SUPERFAMILY	Protein kinase-like (PK-like)	281	574	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc92865g00001	Stsc-Chr92865	565	6132	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc92865g00001	9	624	Receptor kinase-like Gene Family	AT5G16000	73.077	0.0	929

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Stsc92865g00001		Pkinase	5.4e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc92865g00001	-		-	gmx:100790194	1030.39