Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92863g00001 ATGTTTAACGGAATGATGGATCCTGATTTGATCAGAATCGCTCAGGAACAGATGAGTCGCATGTCACCCGCTGAGTTGGCTCGGATCCAACAACAGATGATGTCAAATCCTGATCTGATGAGGATGGCTTCGGATAGCATGAAGAACATGAAGCCTGAAGACTTCAAACTCGCTGCAGAACAGTTAAAGCATACTCGTCCTGAAGATATGGCCGAGATCGGTGAGAAGATGGCTAATGCATCACCTGATGAAATGGCAGCCATGCGAGCCCGTTTTGATGCCCAGATTAAATATCAATTGAGTGCAGCTGAGTTGTTGAAGAAACAGGGCAACGAGCTTCATAACAAGGGACAGTTCACAGATGCTTTGGAGAAGTATTCTCGTGCTAAGGAAAATATTAAAGAGATTCCATCTTCTGAAAGTAGAAAACTTCTTTTGGCATGCTCACTCAACTTGATGTCCTGCTACCTAAAGACGAACCAGTACAATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCATATGATGCAAAGAATCTTAAGGCTCTTTATCGGAGAGGTCAAGCATATAAAGAACTGGGTTTCCTAAGGGATGCTGTTACTGATTTGAACAAAGCACTTGAAGTGTCTCCTAATGATGATACAATTGAAGAGCTTTTACGGGACACCAAGGAAATGTTGACAAAGGAAGGTGGTGACCATGCTCCTGGAGGATTAGTAATTGAAGAAATCACTGAAGAAATCGAGAATGTACCTTCTGGAAACAATAAAAGTTCTTCTTCAGGACAAAAGGTGGTTCAGCCAAGCAAGTTCGGTGAATCCTCTAATAGTTCTAGTACAGTCAATGGATATTCAAAAACAAATGCCGAGAGTATAGATAAGTTGAAAAATGATCCAGTAGCTATGAGATCGTTCCAAAACTTCATTTCAAATGCCGATCCTGCTACTTTGGCTTCTTTAAATCCTGCACAATCCAATGATATATCTCCAGAGATGATGAGAACTGCTACGAATATGATTGGCAAGATGTCTCCTGAGGAACTTCAAAAAATGCTTGAAATGGCTTCTTCATTCCAAGGGGACAACCCGATTTTAAGGGGAGGTTCCTCCAATTCCCCTTTCAACCCGGGATCAATTCCTCCCAACATATCACCTGATATGTTAAAAACAGCAAGTGATATGATAGGTAAAATGCCACCAGATGAGCTTCAGAAGATGTTTGAAATGGCTTCCTCATTGAATGGGAGAGGATCTGTTCCATTGTCAACCCCTGTAGACAATACTGAAAGTTCTTCCCGGTCGGACTTACCATCCTCAAGTACTAGCAGAACTAGTATTTCTGGAGAGTCAAGTTCTTCGCAAAATGTCTTTCCAAATATGAGAAGTGCTTCTCAGCCAAACTTCACTTCCTCGACGACAGATTTGCAAGAACAGATGAGAAATCAGATGAAGGATCCAGCTATGCGTCAGATGTTCTCATCAATGATTAAAAATATGAGTCCAGAAATGATGGCAAACATGGGTGAACAATTTGGTTTCAAGCTTTCACCCGAGGACGCAGCAAGAGCTCAGGAAGCCATGTCATCCTTATCACCAGAAAGCTTGGATAAAATGATGGTTTGGGCAGACAGGGTTCAAAGAGGAGTTGAAGGCGCGAAAAAGACGAAGAACTGGCTGCTAGGGAAACCTGGCATGATCTTGGCAATATGCATGCTCATTTTGGCTATCATTCTTCACCGATTTGGCTTCGTTGGTAGCTAG 1761 0.4219 MFNGMMDPDLIRIAQEQMSRMSPAELARIQQQMMSNPDLMRMASDSMKNMKPEDFKLAAEQLKHTRPEDMAEIGEKMANASPDEMAAMRARFDAQIKYQLSAAELLKKQGNELHNKGQFTDALEKYSRAKENIKEIPSSESRKLLLACSLNLMSCYLKTNQYNECIKEGSEVLAYDAKNLKALYRRGQAYKELGFLRDAVTDLNKALEVSPNDDTIEELLRDTKEMLTKEGGDHAPGGLVIEEITEEIENVPSGNNKSSSSGQKVVQPSKFGESSNSSSTVNGYSKTNAESIDKLKNDPVAMRSFQNFISNADPATLASLNPAQSNDISPEMMRTATNMIGKMSPEELQKMLEMASSFQGDNPILRGGSSNSPFNPGSIPPNISPDMLKTASDMIGKMPPDELQKMFEMASSLNGRGSVPLSTPVDNTESSSRSDLPSSSTSRTSISGESSSSQNVFPNMRSASQPNFTSSTTDLQEQMRNQMKDPAMRQMFSSMIKNMSPEMMANMGEQFGFKLSPEDAARAQEAMSSLSPESLDKMMVWADRVQRGVEGAKKTKNWLLGKPGMILAICMLILAIILHRFGFVGS 586
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc92863g00001 586 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 4 371 - -
Stsc92863g00001 586 SUPERFAMILY TPR-like 92 225 IPR011990 GO:0005515
Stsc92863g00001 586 MobiDBLite consensus disorder prediction 251 285 - -
Stsc92863g00001 586 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Stsc92863g00001 586 SMART tpr_5 146 179 IPR019734 GO:0005515
Stsc92863g00001 586 SMART tpr_5 180 213 IPR019734 GO:0005515
Stsc92863g00001 586 SMART tpr_5 103 136 IPR019734 GO:0005515
Stsc92863g00001 586 MobiDBLite consensus disorder prediction 415 476 - -
Stsc92863g00001 586 MobiDBLite consensus disorder prediction 414 476 - -
Stsc92863g00001 586 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
Stsc92863g00001 586 Gene3D Tetratricopeptide repeat domain 89 233 IPR011990 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc92863g00001 Stsc-Chr92863 1732 6243 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92863g00001 92 227 Calmodulin-binding Proteins AT5G48570 33.099 1.15e-15 78.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92863g00001 - - gmx:100800315 819.69