Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92841g00001 ATGGCTGTTCAAGCTCAATATCCCTCAAATATTCTCTTTCTAAACAGGAACAAGGGGCAAGAAGGACATGATTTTTCATTGCAGGCACAGCATCATCAGCAACCAGGACTAGTCGTCCTTGATCAACCTCCTCCTAATCATCATGTTAATCATATCATATACAACAACAACAATGGAAATGGTAATTATTCAAGGAAGAGAGCAAGAGAACAGCAACAACAACCCACAGTTACAACAGGGCTAGCCCTTGATAACAACAACAATAATAATCCATTGATATCTTTTGAATCACAACCTCCACAACTGATAGACCTTTCTCAGCTCCACAATCACAATAATAATGTGGTCTCAACAGGCCTACGCTTATCCAATAACTCTGCCATGGAACAACAACAACAAAGGTTACAACTTCATGGCTTGTCACACTCTTCATCTTCATCTTCTTCTTCATCTCTCTTATCTCTATTCTCACAAGGATTCGCTTCCCAAATCAAACACCAAAGGGACGAAATTGAACAATTCCTCCAAGCCCAGGGGGAGGAGTTGCGGCGGGCATTGACGGATAAAAGGCAGAGACACTACCGGGCACTGTTAGCCGCGGCGGAGGAGGCGGTGGCACGTCGACTGAGAGAGAAGGAGGTTGAGGTCGAGAAAGCCACGCGCCGTAACGCTGAGTTAGAGGCACGCGCCGCGCAGCTGGCAGCCGAGGCGCAGGTGTGGATGGCGAAGGCGAGGGCACAGGAAGCGGCGGCGGCATCGTTACAGGCCCAGCTCCAGCAGACCATGATGGCCTCTGCTGGCGCCGCCACACACGGCGGAGATGACGGCGGAGCCGGATTGTCATGTGCGGTTGAGGGACAAGCAGAGGACGCAGAATCCGCGTATGTGGACCCGGACAGGGTGGTGATGGTTTCGGCAGCGGCGGCGGTGGATTCAACGGCGGCGCGTCCAAAGTGCCGGGGATGCGGGCGGCGCGTGGCGTCGGTTGTTGTTCTGCCTTGTCGGCACTTGTGCATCTGTACGGAATGCGACGCGCACTTCCGCGCGTGCCCTGTTTGCCTCACACTCAAGAATTCAACCGTTGAGGTCTTTCTCTGA 1098 0.5246 MAVQAQYPSNILFLNRNKGQEGHDFSLQAQHHQQPGLVVLDQPPPNHHVNHIIYNNNNGNGNYSRKRAREQQQQPTVTTGLALDNNNNNNPLISFESQPPQLIDLSQLHNHNNNVVSTGLRLSNNSAMEQQQQRLQLHGLSHSSSSSSSSSLLSLFSQGFASQIKHQRDEIEQFLQAQGEELRRALTDKRQRHYRALLAAAEEAVARRLREKEVEVEKATRRNAELEARAAQLAAEAQVWMAKARAQEAAAASLQAQLQQTMMASAGAATHGGDDGGAGLSCAVEGQAEDAESAYVDPDRVVMVSAAAAVDSTAARPKCRGCGRRVASVVVLPCRHLCICTECDAHFRACPVCLTLKNSTVEVFL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92841g00001 365 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 291 365 - -
Stsc92841g00001 365 Coils Coil 202 243 - -
Stsc92841g00001 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 365 IPR013083 -
Stsc92841g00001 365 ProSiteProfiles Zinc finger RING-type profile. 319 353 IPR001841 -
Stsc92841g00001 365 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 58 363 IPR017066 -
Stsc92841g00001 365 MobiDBLite consensus disorder prediction 56 87 - -
Stsc92841g00001 365 Pfam Zinc finger, C3HC4 type (RING finger) 318 354 - -
Stsc92841g00001 365 PIRSF SBP1_RNase_bind 1 365 IPR017066 -
Stsc92841g00001 365 CDD mRING-HC-C3HC5_CGRF1-like 317 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92841g00001 Stsc-Chr92841 4272 6258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92841g00001 306 353 C3H Transcription Factor Family AT3G06140 36.538 1.76e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92841g00001 K19042 - gmx:100788924 339.347