Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92838g00001 ATGGACACAGTGATGAGTTCCATAATCCTTTTCCTATTAACCTTCACCGTCTTCCATCTCTTTGCTCGTTCCTTTCTCACCAAGCCATCAAAACACAAGCTTCCACCAGCACCCAATGCCATCCCCATCTTCGGTAACCTCCTTCAACTCGGCAATAAGCCACACCGAACGCTTGCCACACTCGCCAAGATCCACGGCCCAATCATGCGCCTCAAGCTAGGCCAAATAACCACCGTGGTCATGTCCTCCGCGGAAACCGCTAAGTCAGCCCTCCAAATCCACGACCAGCACCTTTCCAACCGGAAGATCCCAGACGCAATGAAAGGCGCCGGCCACGACGCTTACAGCCTGCCTTTTATGCCGGTCTCGCCACGGTGGCGAGACCTGAGAAAAATATGCAACAACTTACTCTTCTCCAACAAGAATCTGGACGCGAGCCAAGAGCTGAGGCAAAGAAAGATAAGAGGACTGTTGGGAAAGGTTAAAGAGAGTAGCCTGAGAGGGGAAGTAGTGGATATTGGTAGGCTTGCTTTCATGACAACAATCAACTTGGTGTCCAGCACCATCTACTCTCAAGACCTAATTAATTCCTCCGACGTGGCGGGGGAGTTCAAGGAGCTGGTATCCAACATTATGAAAGAGGTTGGGAGGCCGAACGTGGCGGATTGTTTTCCGGTGCTGAAGGCGGTGGACCCTCATGGCATAAGGAGGCGGACGGGGAGATACTTTGGGAAGCTCTTGGGAATCTTTGAAGGCTTGGTCAGGGAGAGGCTCAGTGTACGGAGTGAGGTTAGTTACTGTCCAAGGAACGATATGTTGGATTTGATGCTGAATAATGCCCCGCATGATCAACACATGTATAATGACAAGATCGAGCGTCTCTCACTGGACTTGTTTTTGGCTGGATCAGACACAATTACAAGTACAGTGGAATGGGCGATGGCAGAGTTACTTCATAATCCAAATGTGATGTCAAAGGCAAAGTCAGAATTAGAAGAAACAGTTGGGAAAGGTAACCTATTAGAAGAATCAGACATTGCAAGGGTGCCATACTTGCAGGCAGTAATAAAAGAAACATTCAGAATGCACCCGGCAGCTCCCCTGCTACTCCCTCGGCAAGCAGAAATAAATATAGATGAGATTGAGGGATACAGGGTGCCAAAGGGTGCACAGGTTCTTGTTAACGCGTGGGCTATTGGAAGGGATCCAAACTTGTGGGACAATCCAGATGTGTTCTCCCCTGAGCGCTTCTTAGGATCCCACATCGACTTCAGAGGACACAATTTCGAGCTCACCCCGTTTGGAGCTGGCAGAAGGATATGTCCTGGCTTGCCCTTGGCTATGAGGATGTTGTTCTTGATGTTGGGTTTGTTTATCAACTGTTTTGATTGGAAGCTTGAAGGTGGGATCCAACCTCAGGATATGGATATGGATGAAAAATTTGGACTCACTCTCGAAAAGGCTAAACCTGTGCGCGTTCTTCCCGTAATCCACTAG 1497 0.489 MDTVMSSIILFLLTFTVFHLFARSFLTKPSKHKLPPAPNAIPIFGNLLQLGNKPHRTLATLAKIHGPIMRLKLGQITTVVMSSAETAKSALQIHDQHLSNRKIPDAMKGAGHDAYSLPFMPVSPRWRDLRKICNNLLFSNKNLDASQELRQRKIRGLLGKVKESSLRGEVVDIGRLAFMTTINLVSSTIYSQDLINSSDVAGEFKELVSNIMKEVGRPNVADCFPVLKAVDPHGIRRRTGRYFGKLLGIFEGLVRERLSVRSEVSYCPRNDMLDLMLNNAPHDQHMYNDKIERLSLDLFLAGSDTITSTVEWAMAELLHNPNVMSKAKSELEETVGKGNLLEESDIARVPYLQAVIKETFRMHPAAPLLLPRQAEINIDEIEGYRVPKGAQVLVNAWAIGRDPNLWDNPDVFSPERFLGSHIDFRGHNFELTPFGAGRRICPGLPLAMRMLFLMLGLFINCFDWKLEGGIQPQDMDMDEKFGLTLEKAKPVRVLPVIH 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92838g00001 498 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 10 496 - -
Stsc92838g00001 498 Pfam Cytochrome P450 35 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc92838g00001 498 Gene3D Cytochrome P450 23 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc92838g00001 498 PRINTS E-class P450 group I signature 395 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc92838g00001 498 PRINTS E-class P450 group I signature 431 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc92838g00001 498 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc92838g00001 498 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc92838g00001 498 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc92838g00001 498 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc92838g00001 498 PRINTS E-class P450 group I signature 441 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc92838g00001 498 FunFam Cytochrome P450 76C4 26 494 - -
Stsc92838g00001 498 CDD CYP76-like 62 495 - -
Stsc92838g00001 498 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 434 443 IPR017972 GO:0005506|GO:0016705
Stsc92838g00001 498 SUPERFAMILY Cytochrome P450 35 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc92838g00001 498 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc92838g00001 498 PRINTS P450 superfamily signature 432 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc92838g00001 498 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc92838g00001 498 PRINTS P450 superfamily signature 441 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92838g00001 Stsc-Chr92838 3623 7699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92838g00001 4 496 Cytochrome P450 AT2G45550 44.444 2.57e-152 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92838g00001 - - lja:Lj2g3v0039250.1 643.269