Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92828g00002 ATGAAAGAGGGTGGTAGGAAGCAGGGTGCAGCCTCACCTTGTGCTGCATGCAAGCTTCTCCGGCGAAGGTGCGCCGTCGACTGCGTCTTTGCGCCGTATTTCCCGGCGGATGAGCCTCACAAGTTTGCAAATGTGCATAAGGTCTTTGGTGCCAGCAATGTCAACAAGATGCTTCAGGAGCTACCAGAGCATCAGAGAGGAGATGCAGTGAGCAGCATGGTGTATGAAGCAAATGCAAGAGTGAGGGACCCTGTTTATGGTTGTGTTGGAGCCATTTCTTCACTTCAGCAACAGATTGATGTGTTGCAAACCCAACTGGCTGTGGCTCAGGCTGAGGCTGTTCATCTTCGGGTGCGCCAGAGCGCATCCTCCTCCTACTGGACCCACCAAGCCCATAGCCCAACCAATAGTGGCTCCCCATCATCCAAGCCCATTTTCGACACGGACATGGGCTTAGACCATACCTCTTATGCGGATTCTATGTGGTTGTGA 492 0.5305 MKEGGRKQGAASPCAACKLLRRRCAVDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQSASSSYWTHQAHSPTNSGSPSSKPIFDTDMGLDHTSYADSMWL 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92828g00002 163 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Stsc92828g00002 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 135 - -
Stsc92828g00002 163 Coils Coil 92 112 - -
Stsc92828g00002 163 MobiDBLite consensus disorder prediction 127 144 - -
Stsc92828g00002 163 MobiDBLite consensus disorder prediction 127 147 - -
Stsc92828g00002 163 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92828g00002 Stsc-Chr92828 3018 6080 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92828g00002 1 162 AS2 family AT1G31320 70.588 1.05e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc92828g00002 LOB 2e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92828g00002 - - gmx:100306560 274.633