Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92812g00001 ATGGACCCTTCTGTGCCTGGGAGTTATCCTGCTTTTCCATTCCTTGGGGCTGATAATACGGATGGTCACATTGCAAAGACTGGTGGGGTTGCTGAACCCATCTTTTCATCCGGTAACAATCCTATGTTAGTGTCCTCATCTCCGGCTGCCGGTGTGTTCAGCCCTCAGCAGCCTGTGTTTGGAATTGTGGATGAGAAGCCTCAGGTTATTAATCCTCAGTTTATGATGAACCATAATCAGGTTCAGTTTCCAGAGAATCCTTCATTCTTTGTGCCATTGACATACCCCCAAGTGCAAGAGCAGCAAGTTGTTTACTCTCAGCAACCACCGAAGCGCCCTCTTTCCGATGTGGCGGTCGGGCACAATTATCAGGTGCCGAGATTACCCCTTTTGGATTCGGGGCAGGAGCAATTTGCTAGGAGGCAGCAGCAGGCCCAGCTTCCTTTGTTTCCTCATCATATTCAGCAGCAGAAGGTGAGTTCTGCCGGAGACGAGGCGAGCAACCAGCTTCAGCAAGCTATGTTTGACCAGCTTTACAAGACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCTTGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCCCCGATCGGCAAGCCTTTTCAAAGGGCTGCTCTCTACATGAAGGAGGCATTGCAACTACTGCCCCATTCAAACATATCCAATTTAATGGCTTTCTCACCTATCAGTTTCATATTCAAAGTTGGAGCTTATAAATCGTTTTCAGAGATATCACCAGTTCTCCAGTTTGCAAACTTCACTTCTAATCAAGCCCTCATCGAAGCTCTAGAACGGTTTGATCGAATTCACATCATTGACTTTGATATTGGGTTTGGAGTGCAGTGGTCATCTTTTATGCAAGAGCTTGCCTTGAGAAATAGTGGTGCATCTTCTCTTAGAGTTACTGCCGTGGTATCGCCCTCGACCTGCGACGAGGTTGAGCTCAGTTTTACAAGAGAGAATTTGAGTCAATATGCAAAAGACATCAACTTGTCCTTTGAGCTCAATATCTTGAACATCGAATCGTTGAGCTCTCCTTCGTTTTCCCTGGCTGGACAATTCTTTGATAACGAGGCAGTTGCTGTAAATATGCCGCTTTCTTGTTTCACTCACCATCCGTCGCTGGTTCCATCGGTCCTTCACTTTGTCAAGCAGCTTAGGCCTAAAGTGGTGGTTACTTTAGACCGAAACTGTGACCGAATCGATGTGCCTCTTCCAACCAAGGTAGTCCATGTTCTTCAATATTACTCTGCCTTGCTTGAATCCCTTGATGCTGTGAATGTGAACCTAGATGTCCTCCAAAAAATTGAGAAGCATTTCATCCAACCATCCATTAGGAAAGTGATCGTCGGTGACCACCATTACCATTCACAAGACAAGCTACCTCATTGGAGGAACCTGTTTGTTCAATCTGGATTCTCATCATTCACATTCAGTAACTTCACCGAAGCTCAAGCAGAATGTCTGGTGCAGCGCGCACCGGTCCGGGGATTCCAAGTGGATCGAAATCATTCCTCTCTTGTTCTATGCTGGCAGCGAAAAGACCTGGTGTCTGTCTCAACTTGGAGATGCTAA 1605 0.4679 MDPSVPGSYPAFPFLGADNTDGHIAKTGGVAEPIFSSGNNPMLVSSSPAAGVFSPQQPVFGIVDEKPQVINPQFMMNHNQVQFPENPSFFVPLTYPQVQEQQVVYSQQPPKRPLSDVAVGHNYQVPRLPLLDSGQEQFARRQQQAQLPLFPHHIQQQKVSSAGDEASNQLQQAMFDQLYKTAELIEAGNPVLAQGILARLNHQLSPIGKPFQRAALYMKEALQLLPHSNISNLMAFSPISFIFKVGAYKSFSEISPVLQFANFTSNQALIEALERFDRIHIIDFDIGFGVQWSSFMQELALRNSGASSLRVTAVVSPSTCDEVELSFTRENLSQYAKDINLSFELNILNIESLSSPSFSLAGQFFDNEAVAVNMPLSCFTHHPSLVPSVLHFVKQLRPKVVVTLDRNCDRIDVPLPTKVVHVLQYYSALLESLDAVNVNLDVLQKIEKHFIQPSIRKVIVGDHHYHSQDKLPHWRNLFVQSGFSSFTFSNFTEAQAECLVQRAPVRGFQVDRNHSSLVLCWQRKDLVSVSTWRC 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92812g00001 534 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 162 529 IPR005202 -
Stsc92812g00001 534 Pfam GRAS domain family 176 533 IPR005202 -
Stsc92812g00001 534 ProSiteProfiles GRAS family profile. 165 533 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92812g00001 Stsc-Chr92812 7068 8994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92812g00001 173 534 GRAS Transcription Factor Family AT4G00150 53.297 1.60e-125 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc92812g00001 GRAS 1.2e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92812g00001 - - gmx:100801785 776.163