Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92743g00001 ATGATGGAATCGGATCTTGGCAAACTCTTCGTTGGAGGAATATCTTGGGACACCGATGAGGAACGTCTCAAGGAATATTTTGGAAAATATGGGGAGGTTATAGAGGCTGTGATCATGAGAGATCGAACCACCGGTCGTGCTCGTGGTTTCGGCTTTGTTGTCTTTGCTGATCCTGCTGTTGCCGAGAGAGTCATTGTGGATAAGCACATAATCGATGGCCGCACGGTTGAAGCAAAGAAAGCTGTTCCTAGAGATGATCAACAGTCCATAAATAGACAGTCCGGTAGTGCGAATGCCTCTCCTGGTCCCGGACGCACGAAAAAGATCTTTGTTGGAGGTTTGCCATCAACTATCACGGAAAGCGATTTCAAGAAGTATTTTGATCAGTTTGGTACAATTACTGATGTTGTAGTGATGTATGATCACAATACTCAAAGGCCAAGAGGTTTTGGCTTCATCACATTTGACTCAGAAGAAGCCGTGGATCGAGTTCTTTATAAAACTTTTCATGAACTGAATGGAAAGCTGGTTGAAGTCAAGAGAGCAGTTCCAAAAGAGCTATCCCCTGGCCCCAGCCGAAGCCCATTGATAGGTTATAACTATGGTATAAATAGGGCCAGTAGCTATCTAAACAATTACGCTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGAGTCAGGATGGATGGTAGGTTTAGTCCTCTTACTAGTGGTAGAAGCGGGTTTACTCCATTTGGCAATAGTGCTTATGGAATGGGAGTGAATTTGGAGCCGGGATTGAGCCCGAGCTATGGAGGAACTTCTAGTTACGGGAACAATATAGGATACGGTCGAATATTTAGTCCTTTCTACAGTGGAAACTCGAGCAGATACACCACTCCCATAGGCTATAGTGGGGGTAATAGCAGAAGCGACTCTCTTATGAACTCACCTTCTCGGAATGTCTGGGGAAATGGGGTCCTGAACAATTCTAATAACGCAATCAGTCCTGGTTCTTTCTTGGGATCTGGAAGTGGGAGCTTTGGTGTCTCGATTGGAAATGGTGGCGCTAATTGGGGTCCATCGGTTCCATCCCAAGGCGGAGGAGCGGCTTCTGGCTATGCTACAGGGAATAATGTTTATGAAGGTGGAGAATCCGGCTTCGGGTTAGGTGGGGGAGGGTATGGAAGAAACAGCGGTACGGGTATGACTCCATCCTCTACTTTCGCTGCATCAACTGGTAGCTTTGAAGGATCCTATGGGGATTTATACCGAACAGGCAGTGGTTCAGTTTACAACGACTCTGCTTGGCGGACCGCTCCTTCTGAGATAGATGGCTCCGGCTCTTTTGGTTACGGTCTTGGTGGTATAGCTTCAGATGACCCTGTAAAGACTTCTGATGGTTATATCGGAAGCTACAATGTTACAAGTAGACAATCTAATAGAGGAATTGCTGCCTAG 1443 0.4615 MMESDLGKLFVGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQQSINRQSGSANASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLYKTFHELNGKLVEVKRAVPKELSPGPSRSPLIGYNYGINRASSYLNNYAQGYSMSPIGGYGVRMDGRFSPLTSGRSGFTPFGNSAYGMGVNLEPGLSPSYGGTSSYGNNIGYGRIFSPFYSGNSSRYTTPIGYSGGNSRSDSLMNSPSRNVWGNGVLNNSNNAISPGSFLGSGSGSFGVSIGNGGANWGPSVPSQGGGAASGYATGNNVYEGGESGFGLGGGGYGRNSGTGMTPSSTFAASTGSFEGSYGDLYRTGSGSVYNDSAWRTAPSEIDGSGSFGYGLGGIASDDPVKTSDGYIGSYNVTSRQSNRGIAA 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92743g00001 480 SUPERFAMILY RNA-binding domain, RBD 106 194 IPR035979 GO:0003676
Stsc92743g00001 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 83 IPR000504 GO:0003723
Stsc92743g00001 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Stsc92743g00001 480 CDD RRM2_Hrp1p 108 185 - -
Stsc92743g00001 480 CDD RRM1_hnRNPA_hnRNPD_like 9 79 - -
Stsc92743g00001 480 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 2 476 - -
Stsc92743g00001 480 Gene3D - 7 86 IPR012677 -
Stsc92743g00001 480 Gene3D - 87 195 IPR012677 -
Stsc92743g00001 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Stsc92743g00001 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 168 IPR000504 GO:0003723
Stsc92743g00001 480 MobiDBLite consensus disorder prediction 79 106 - -
Stsc92743g00001 480 FunFam Heterogeneous nuclear ribonucleoprotein 1 6 88 - -
Stsc92743g00001 480 MobiDBLite consensus disorder prediction 87 101 - -
Stsc92743g00001 480 FunFam Heterogeneous nuclear ribonucleoprotein 1 104 191 - -
Stsc92743g00001 480 SMART rrm1_1 8 79 IPR000504 GO:0003723
Stsc92743g00001 480 SMART rrm1_1 108 180 IPR000504 GO:0003723
Stsc92743g00001 480 SUPERFAMILY RNA-binding domain, RBD 5 104 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92743g00001 Stsc-Chr92743 4601 9230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92743g00001 6 181 Eukaryotic Initiation Factors Gene Family AT2G23350 25.843 3.33e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92743g00001 K14411 - gmx:100805131 828.935