Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92736g00003 ATGAGGGGAAACACGGTGAGGGATCTGGCTATGAGAGAGCGCGATGTGAGAAAAGGGGTATGGTTTGAGCGTGGGAAACAAGGTGAGGGATCTAGCTATGCCGGAGGAAGGAACAAGGGGGATAGTGGGGGTGGGCTTGTATTAGGTGCTCGGAGGTTGGGAAACTTGGTTGACTTAGGTTACAGAGAGGTGGAGACTCACACAATATTCGTCGATGGACTTCCGGCGATTATTTCCAAGAGAGAGTTATACAAGGCATTTGGGAGATTTGGATTTATATCAGACATTTTCATTTCAAGGAAGGCTCGGCGGAGTGGTCAAGGTCCATTTGCGTTCATTAGATACAGTGCTTATGGTGGGGCTCTGAAGGCTATTGAAAGCATGAACGACATGGATTGGTGGAATAATAAACTTTATGTCACGATGTCTAAATTTAGGCGAAATGAAGAAGCACACAGAAAAATACAGGGCAAGACAATGAGAGCTTGGCTGTAA 495 0.4606 MRGNTVRDLAMRERDVRKGVWFERGKQGEGSSYAGGRNKGDSGGGLVLGARRLGNLVDLGYREVETHTIFVDGLPAIISKRELYKAFGRFGFISDIFISRKARRSGQGPFAFIRYSAYGGALKAIESMNDMDWWNNKLYVTMSKFRRNEEAHRKIQGKTMRAWL 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92736g00003 164 CDD RRM_SF 69 140 - -
Stsc92736g00003 164 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Stsc92736g00003 164 SMART rrm1_1 68 141 IPR000504 GO:0003723
Stsc92736g00003 164 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 132 IPR000504 GO:0003723
Stsc92736g00003 164 Gene3D - 13 157 IPR012677 -
Stsc92736g00003 164 SUPERFAMILY RNA-binding domain, RBD 60 148 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92736g00003 Stsc-Chr92736 3032 3526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92736g00003 69 156 Eukaryotic Initiation Factors Gene Family AT1G22760 35.165 1.95e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92736g00003 K12891 - ahf:112805528 80.1073