Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92625g00001 ATGGGAATTCAGAGATATATGGTTGCTGCCGCAGCGAAAGTCAGCTTTTGTGTAGTTTTGGTTCTTCTTGTTGTAGGAACAGTTAGATTTATAGATAAGAAGGGAACACAAGAAGGTGTTATTGGAGAGTTGCTTGATCCAGCATCTGAATTGCTAGATGACAACTCGGTAGAGATACTATGGTCCAAAAATAATATTCATCTGAATAAAGAGGCAGAAGATATCCATATATGCCTTCGACAAGAATTGCCTGTTAACTTCAATACAATTGGTACAGATATTCAACCGTTAACGCAAGCAGACATCCAAAAATTGATTAATCTTTGTCATTATCAGTTCAAGGAAAAGTGTGTCCACTGTTTGAAGACGATTAATCTTCCATTACTGTCATTGGGGAACGATGATGATGATTCCAAGATTTGGCATGCTGCATCTAGGGGACTGCATTTTTCTGGATCTAGTCCTTCCAGACAAAACATGGGTCGCGTTTTGCTTCAGCAGATACCGGGAGCACCTAGTCCAGGTCCTGCTGTTGGATCACCAACACCGAGTCCTTCACCGTCCCCTGGACCCAGTTTAGCACCATCATCCGAACCTAGCCCAGCACCATCCCCTGGACCTGGTCTGGCCCCACTGTCTGCTCCGGTACCTGTTGATCCTAGACCTCTGCACCCTCCTTTGTCACCATTTTTTCCTAAACTGACACCACCAACAACAAAAAATGCAGATATTTCTGCTCCTCCGTCATCGGACACTAATAAAACTGAAGATAAGCATAGTAGTAAGAAAACAGTTGTTATTGCTGTAGTTATAACTGCACTGGTGACATTGATAGGAGCAGCAATGCTCTTTATGTTCTGTGGTCGGTTTTCGAAGACTGGCCAAGGTAGAAAAAATGATGAGAGGCCACTTCTCAGCTTGAGCATGAGTGACTATTCCGTTGGTCCTTCCAGTTACGGATTTGGAAATTCAACAAATGGAGAGAAACTTGGGCTCCAATCATCAAGTAATAATTTGTTTGGCAACAAGAAGCCTCAGGTTCAAAATAGTCAATCAATAGGAGCTTTTAGTGCTGCTTCAGGATCACCATTTGAAGGAAAAGCTCATTCCCAGTGGGCAGGAACCATGCCTTCTGGAATGCCTCCTTTAAAACCTCCACCTGGCAGGCTGAATCCTCTCCCCCCTGAGCCTCCTTCATTTAGGCCTTCTGGTAATGCTGCTGCCCCTGGCTCGGCTACTCATGGTCCACAACAGCTTGGTGTTGGTGGTGCTCCACGTCCTGGCCCTCCACCACCACCACACCCAGAACCAGTTGGTGCCAAACATTCTCCTCCCCTGCCACTACCCCCAGCGTTGGCTGCTGCCAGAGCTCATCCTCCACCACCACCACCTCCTGCACCTGTTGGGGCCAGACCTAGTCCTCCACCACCACCATCCTCTGCATCAACAGGTGAGAAACCTAGTCCTCCTCCACCACCCCCAGCTCCAGCTGGTGTCAAACCTGGTCATCGTCCACAACCACCTCCTAAGGGTGGCATACCTCCTCCTCGCCCACCTCCTCCAATTGGGTCTAGCAAACATAAAGCCACAGAGAATGTTCAAGCTAACTCTGATCAATCAATGGTTTGGAATCAGATCAAGTCTGGATCATTCCAGTTTAATGAGGAGATGATAGAAACACTTTTTGGCTATAACACTGCGGATAAAATCAATGGTCAACGAGGGAAAGTGTCTTCCTCCCAAGAGCCTTCACCTCAGTATATCCAGATCATTGACAAAAAGAAAGCACAAAATTTATTAATTCTGTTGCGAGCATTGAATGTGACAATGGAAGAAGTATGTGATGCACTTTATGAAGGAAATGAGCTACATACTGAGTTCCTCCAAACCTTGCTCAAGATGGCACCAACGACTGATGAACAACTTAAGCTTAGACTTTTTACTGGTGAGCTATCTCAACTTGGTCCAGCCGATCAGTTCTTGAAAGCCATGGTTGACATTCCATTTGCTTTTAAGCGAATGGAGGCACTTCTTTTCATGAGTACACTGAAAGAGGATCTCAATTCTACTATCGAGTCTTTTGCAGTTCTAGAGGTTGCTTGTAAGGAACTAAAAAACAGCCGGCTGTTCCTCAAGCTTCTTGAAGCTGTTCTCAAAACCGGCAACCGTATGAATGATGGAACATTCCGTGGTGGTGCACAAGCATTTAAGCTTGATACACTCCTGAAACTATCTGATGTAAAAGGAACAGATGGCAAGACCACACTCTTACACTTTGTTGTCCAAGAGATTATCCGCTCTGAAGGCATAAAAGCTGCCCGGTTGGCGAAAGAGAGCGACCCCAAAGATAGCCCTAGCGAAACCGAAGATCACTACCGTGAAATCGGTCTTCAGGTGGTTTCGCACTTGAGTAGTGAACTTGAGAATGTCAAGAGAGCAGCAATTCTAGATGCCGACACCTTAACTGGAACTACTGCCAAACTTGGTCATGGTCTCATGAAAACCAAAGATTTGTTAAACAAAGATCTGAAGAGTGTAGAGGAAGATAGAGGGTTTAGTGACACATTGAGACATTTCGTGCAGAATGCCGAGACTGATGTCGTGAGACTTCTGGACGAAGAGAAGAGAGTCATGACTCTGGTAAAGAGCACTGGTGATTACTTTCATGGGAAGGCCGGCAAGGACGAAGGCTTACGGTTGTTTGTAATAGTAAGAGACTTCTTAATAATGTTGGACAAGGCATGTAAGGAGGTGAGAGATGCACAGAAGCAGCCTGCAAAATCTCACAAACAAGAGGCATCTCAAGGATTGTTTTCCTCAGAAACTCGTCCGCCACCACCTTCTGATTTTCGTCAACGGCTCTTTCCAGCAATTGCTGAAAGGAGGATAGGTGACAGTAGTTCAGATGATGAGAGTCCATAG 2922 0.4555 MGIQRYMVAAAAKVSFCVVLVLLVVGTVRFIDKKGTQEGVIGELLDPASELLDDNSVEILWSKNNIHLNKEAEDIHICLRQELPVNFNTIGTDIQPLTQADIQKLINLCHYQFKEKCVHCLKTINLPLLSLGNDDDDSKIWHAASRGLHFSGSSPSRQNMGRVLLQQIPGAPSPGPAVGSPTPSPSPSPGPSLAPSSEPSPAPSPGPGLAPLSAPVPVDPRPLHPPLSPFFPKLTPPTTKNADISAPPSSDTNKTEDKHSSKKTVVIAVVITALVTLIGAAMLFMFCGRFSKTGQGRKNDERPLLSLSMSDYSVGPSSYGFGNSTNGEKLGLQSSSNNLFGNKKPQVQNSQSIGAFSAASGSPFEGKAHSQWAGTMPSGMPPLKPPPGRLNPLPPEPPSFRPSGNAAAPGSATHGPQQLGVGGAPRPGPPPPPHPEPVGAKHSPPLPLPPALAAARAHPPPPPPPAPVGARPSPPPPPSSASTGEKPSPPPPPPAPAGVKPGHRPQPPPKGGIPPPRPPPPIGSSKHKATENVQANSDQSMVWNQIKSGSFQFNEEMIETLFGYNTADKINGQRGKVSSSQEPSPQYIQIIDKKKAQNLLILLRALNVTMEEVCDALYEGNELHTEFLQTLLKMAPTTDEQLKLRLFTGELSQLGPADQFLKAMVDIPFAFKRMEALLFMSTLKEDLNSTIESFAVLEVACKELKNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIKAARLAKESDPKDSPSETEDHYREIGLQVVSHLSSELENVKRAAILDADTLTGTTAKLGHGLMKTKDLLNKDLKSVEEDRGFSDTLRHFVQNAETDVVRLLDEEKRVMTLVKSTGDYFHGKAGKDEGLRLFVIVRDFLIMLDKACKEVRDAQKQPAKSHKQEASQGLFSSETRPPPPSDFRQRLFPAIAERRIGDSSSDDESP 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92625g00001 973 Pfam Formin Homology 2 Domain 532 911 IPR015425 -
Stsc92625g00001 973 MobiDBLite consensus disorder prediction 324 358 - -
Stsc92625g00001 973 MobiDBLite consensus disorder prediction 324 540 - -
Stsc92625g00001 973 MobiDBLite consensus disorder prediction 423 523 - -
Stsc92625g00001 973 Gene3D Formin, FH2 domain 535 938 IPR042201 -
Stsc92625g00001 973 MobiDBLite consensus disorder prediction 174 233 - -
Stsc92625g00001 973 PANTHER FORMIN-RELATED 159 957 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Stsc92625g00001 973 MobiDBLite consensus disorder prediction 928 946 - -
Stsc92625g00001 973 MobiDBLite consensus disorder prediction 379 402 - -
Stsc92625g00001 973 MobiDBLite consensus disorder prediction 234 251 - -
Stsc92625g00001 973 SUPERFAMILY Formin homology 2 domain (FH2 domain) 585 933 - -
Stsc92625g00001 973 MobiDBLite consensus disorder prediction 955 973 - -
Stsc92625g00001 973 ProSiteProfiles Formin homology-2 (FH2) domain profile. 515 937 IPR015425 -
Stsc92625g00001 973 MobiDBLite consensus disorder prediction 921 973 - -
Stsc92625g00001 973 SMART it6_source 373 926 IPR015425 -
Stsc92625g00001 973 PRINTS Proline rich extensin signature 169 185 - -
Stsc92625g00001 973 PRINTS Proline rich extensin signature 420 432 - -
Stsc92625g00001 973 PRINTS Proline rich extensin signature 225 246 - -
Stsc92625g00001 973 PRINTS Proline rich extensin signature 377 402 - -
Stsc92625g00001 973 PRINTS Proline rich extensin signature 192 204 - -
Stsc92625g00001 973 MobiDBLite consensus disorder prediction 167 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92625g00001 Stsc-Chr92625 2186 7890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92625g00001 531 963 FH2 protein (formin) Gene Family AT5G54650 65.695 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92625g00001 - - gmx:100793413 965.681