Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92613g00002 ATGCGCTGCTATACTCTTCCTAGTTCTTATCACCTTCACAAATTAACATCACCACCACCAACAACATTCCAATTCCCATCCAAAACAGAAACACCCAACAACTTCTATCCGCCCAAACCCGCCTCCGCCAATGCGACCCGACCCGTGATGCGACTGAGCGTCAAAGCGGCGTCGGTGTCGTTCGATGCGGTGGAGGCGGATGAAGGGAGCATGAGCTTGTACGAGGTTCTTGGTGTGGCGGTGTCCGGGACGGCGGCGGAATTGAAGAAGGCGTACAAGAAGCTTGCGAGGAAGTACCATCCTGACGTGTCGCCGCCGGGTCGGGCTGAAGAGTACACGAGGAGGTTTATTCGTGTGCAGCAGGCGTACGAGACTCTGTCTGATCCCGCATTGAGAGAGCTTTACGATAGAGATATGGCGATGGCCATGAAATTTCCAATCTCCTCTCGGTTATGCCAAACCCGCTACCGTCGTCAACCCCATCCTTTCCGTTACCAGGTTATCGAACAAAGAAATGACTGGAAAACTCTTTTGGAGTTACAACTCTCAGGATTGAAGAGAAGAAGCCAAAGCAAACTTGGTGGAGGCAATGAATCTTGGGCAGCTCAAATGCGTAATAAGAATTATAATTACAAGTAA 639 0.5039 MRCYTLPSSYHLHKLTSPPPTTFQFPSKTETPNNFYPPKPASANATRPVMRLSVKAASVSFDAVEADEGSMSLYEVLGVAVSGTAAELKKAYKKLARKYHPDVSPPGRAEEYTRRFIRVQQAYETLSDPALRELYDRDMAMAMKFPISSRLCQTRYRRQPHPFRYQVIEQRNDWKTLLELQLSGLKRRSQSKLGGGNESWAAQMRNKNYNYK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92613g00002 212 MobiDBLite consensus disorder prediction 17 42 - -
Stsc92613g00002 212 Gene3D DnaJ domain 58 149 IPR036869 -
Stsc92613g00002 212 CDD DnaJ 74 128 IPR001623 -
Stsc92613g00002 212 SUPERFAMILY Chaperone J-domain 70 142 IPR036869 -
Stsc92613g00002 212 ProSiteProfiles dnaJ domain profile. 72 139 IPR001623 -
Stsc92613g00002 212 PRINTS DnaJ domain signature 74 92 IPR001623 -
Stsc92613g00002 212 PRINTS DnaJ domain signature 92 107 IPR001623 -
Stsc92613g00002 212 PRINTS DnaJ domain signature 111 131 IPR001623 -
Stsc92613g00002 212 Pfam DnaJ domain 73 136 IPR001623 -
Stsc92613g00002 212 ProSitePatterns Nt-dnaJ domain signature. 116 135 IPR018253 -
Stsc92613g00002 212 SMART dnaj_3 71 131 IPR001623 -
Stsc92613g00002 212 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 53 208 - -
Stsc92613g00002 212 MobiDBLite consensus disorder prediction 17 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92613g00002 Stsc-Chr92613 4820 7547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92613g00002 74 136 C2H2 Transcription Factor Family AT1G74250 40.909 2.99e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92613g00002 - - ahf:112795692 247.669