Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92601g00001 ATGGAACATGACGGTGGTAATAAACATACTCCTCACAAAACTCCGTACACTCAGCTTGAACAGGTTAGCTCTGATTTCATTCTAGCAATTGGCCAGCAAGAACAAGACGGAACAATATTCGCAGCACTCGGAACAATACTCGAAAGCCAAGGCTCCTCATCGTCAATTGATAACGAGCAGGACGACAACGATGATAACGCAGATTTCTTCACGAGCTATGAGTTTGAGCCGTCAGACCTTCAGTTTCTTGAGAGCGAAGGAAGCAACTACGGCGACGAAGACATGGATGACTTGGACGTGGATGAATTGACATACGAAGAGTTGATTGAGTTGGAAGACTTTATAGGTAAGGAGAAGAGAGGGTTATCATCAAACGAGGTTTCTTCGTGCTTGCATTCTTACACCTTCGATTCTGTTGATGAGAGGAAAAATAATGGAACCGATCGGTGTGTGATTTGCCAGATTGAGTATGAAGAAGGTGAAGGATTGGCGGTACTTCATTGTGGGCATCCTTTCCACACAGATTGCATAAGCAAGTGGCTTCAAGTTAGAAAGGTTTGCCCAATATGTAGCAGTGAAATTCCCGGTACTCCCGAGATTATGAATAAACAAGAACCTTTCATTGTATAG 630 0.4349 MEHDGGNKHTPHKTPYTQLEQVSSDFILAIGQQEQDGTIFAALGTILESQGSSSSIDNEQDDNDDNADFFTSYEFEPSDLQFLESEGSNYGDEDMDDLDVDELTYEELIELEDFIGKEKRGLSSNEVSSCLHSYTFDSVDERKNNGTDRCVICQIEYEEGEGLAVLHCGHPFHTDCISKWLQVRKVCPICSSEIPGTPEIMNKQEPFIV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92601g00001 209 FunFam E3 ubiquitin ligase BIG BROTHER-related 114 197 - -
Stsc92601g00001 209 SUPERFAMILY RING/U-box 149 195 - -
Stsc92601g00001 209 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 55 195 IPR033276 GO:0004842|GO:0016567|GO:0046621
Stsc92601g00001 209 MobiDBLite consensus disorder prediction 51 70 - -
Stsc92601g00001 209 Pfam RING-H2 zinc finger domain 144 190 IPR024766 GO:0008270
Stsc92601g00001 209 ProSiteProfiles Zinc finger RING-type profile. 150 191 IPR001841 -
Stsc92601g00001 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 197 IPR013083 -
Stsc92601g00001 209 SMART ring_2 150 190 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92601g00001 Stsc-Chr92601 2864 3720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92601g00001 96 200 C3H Transcription Factor Family AT3G63530 49.057 6.21e-30 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92601g00001 K19045 - qsa:O6P43_015155 206.453