Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92581g00001 ATGTCCGTACAGTCAAGACTGAACTTGAAGCTCCCGCCCTCAAGCTCAAATTTTGAGGGGGACCCACCAACAAGCAAGACGAGGCGCAAACCCAAACACAAGCTGGTTCGGATCATTCTCACCGACCACGACGCCACCGATTCCGATTCTTCAAGCGACGAAGCTCAACAAAACAACACACACAAGAAACTCAAAAGAGAGATCACGCAAATAACCATGCACCTTCCCTCACCGTATTCCTCCACCACTACTTCTTCCTCTTCCTCTCCTTCTCCTTCTCCTTCAACTTCCTCTTCTACCTTTTCTTCTGTCTCTTCTGATTCATTGCAACAGAGGACCAAGCCATGCAAGAGACCCAAGAAACCGAAGCTTCCTTCGGCGGAGCGTCACCGCAACAGGTTCCGCGGTGTCAGACAGCGGCCGTGGGGACGGTGGGCCGCCGAGATCCGTGACCCGACCCAAAGAAAGCGGGTCTGGCTTGGAACCTTTGACACGGCGGAGGAGGCCGCCACCGAGTACGACCGTGCGGCGCTGAAGCTTAAGGGTCCAAACGCCGTCACGAACTTTCCGGTGAGTTCTCCGCCGGAGATTACGGCGGCCGATGACGGTGTAGCGGTGTTTTCTGACGCTGTGGCGCTGTCTCCGACTTCTGTTTTGCCTTACGACGGTTACTCGACGCCGTTCGACGGTTTCCGTTTCGTGGACGCGTTCGGGTTCGATATCGCCGATGAGGCTCCGTTAAGTTTGACGGACGTTGACGTTAACAGCGTTACGCTGACGTGTCAGCGCCTTGATGGGAAGGAGGATGAAGCGTTCGGCGAATTTGACCTCGACGAGTTCATTACGTGGCCGTACTAA 858 0.5513 MSVQSRLNLKLPPSSSNFEGDPPTSKTRRKPKHKLVRIILTDHDATDSDSSSDEAQQNNTHKKLKREITQITMHLPSPYSSTTTSSSSSPSPSPSTSSSTFSSVSSDSLQQRTKPCKRPKKPKLPSAERHRNRFRGVRQRPWGRWAAEIRDPTQRKRVWLGTFDTAEEAATEYDRAALKLKGPNAVTNFPVSSPPEITAADDGVAVFSDAVALSPTSVLPYDGYSTPFDGFRFVDAFGFDIADEAPLSLTDVDVNSVTLTCQRLDGKEDEAFGEFDLDEFITWPY 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92581g00001 285 MobiDBLite consensus disorder prediction 1 22 - -
Stsc92581g00001 285 Gene3D AP2/ERF domain 132 192 IPR036955 GO:0003700|GO:0006355
Stsc92581g00001 285 SMART rav1_2 133 196 IPR001471 GO:0003700|GO:0006355
Stsc92581g00001 285 PIRSF PTI6 1 285 IPR017392 GO:0003700
Stsc92581g00001 285 SUPERFAMILY DNA-binding domain 133 192 IPR016177 GO:0003677
Stsc92581g00001 285 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 196 - -
Stsc92581g00001 285 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Stsc92581g00001 285 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700|GO:0006355
Stsc92581g00001 285 ProSiteProfiles AP2/ERF domain profile. 133 190 IPR001471 GO:0003700|GO:0006355
Stsc92581g00001 285 MobiDBLite consensus disorder prediction 37 69 - -
Stsc92581g00001 285 MobiDBLite consensus disorder prediction 115 138 - -
Stsc92581g00001 285 MobiDBLite consensus disorder prediction 1 139 - -
Stsc92581g00001 285 CDD AP2 133 192 IPR001471 GO:0003700|GO:0006355
Stsc92581g00001 285 MobiDBLite consensus disorder prediction 73 112 - -
Stsc92581g00001 285 FunFam Ethylene-responsive transcription factor 2 132 191 - -
Stsc92581g00001 285 Pfam AP2 domain 133 182 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92581g00001 Stsc-Chr92581 4495 6391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92581g00001 26 224 AP2-EREBP Transcription Factor Family AT4G27950 40.476 1.24e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc92581g00001 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92581g00001 K13434 - gmx:100800489 260.766