Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92579g00001 AACAGGGCACGAAATCAGCCCGTGGATGAGGAGAAGGGAGGCATGATGACGGTGTTTGCCGACAACCTTCCAAGAAACACAACGAGTGCATGGGTATGGAAGATCTTTGGCAATGAAGGAAGAGTGGTAGATGTCTATGTATTGAGAAAAGTTCGACATAGAAACCCTCTAATGTTCACGTTCGTGAGATTTGCGGATAGAAGGGATGCAGTGAAGGCAATACAGAACCTGGATGGGTGGGTGGTATGGGGATGTCGACTGCAGGTTTCAGAAGAAAGGTATCGGAGAGATGGGTCTCCAAAAACAGAGAATGGGGAACAAGGGTAG 327 0.4801 NRARNQPVDEEKGGMMTVFADNLPRNTTSAWVWKIFGNEGRVVDVYVLRKVRHRNPLMFTFVRFADRRDAVKAIQNLDGWVVWGCRLQVSEERYRRDGSPKTENGEQG 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92579g00001 108 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Stsc92579g00001 108 Gene3D - 1 108 IPR012677 -
Stsc92579g00001 108 CDD RRM_SF 18 90 - -
Stsc92579g00001 108 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 86 IPR000504 GO:0003723
Stsc92579g00001 108 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
Stsc92579g00001 108 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 17 97 - -
Stsc92579g00001 108 SMART rrm1_1 17 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92579g00001 Stsc-Chr92579 2135 2461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92579g00001 14 89 Eukaryotic Initiation Factors Gene Family AT4G34110 31.579 2.16e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92579g00001 - K12831 adu:107484100 65.0846