Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92549g00001 ATGAAAACAGTTTTGGAGAAGCTTTTCGATTTGTACTTTTTACTCCTCTATATTTACACCATTGCCCTTTCCCCTTTGGCCTCCCTTCCTCTTCTCTTGTTCATCAATGGCGTCACCACCGCCCTAACTCACTTACAACCATCACGCATCATTATCACTGTGTTACAAGGAATACGCACTTGCAGCAAATTAAAGCATGACTACTCCACCATCAACCTCAACCTCAAGAGGCTCAAAAAACAAGTGAAATTTGCAGCAGAAAAGCAAGCCCCATTGCAAAAGCCACCTGATTCTTCAGCAAATTTATCGAGCGACGAGATAAAACCACTTTCAGGAAATCCATTCTTTCATGTAGTTCTTTCAAAATCACATGTACATCGTAGTTGTCTCATGGGACCATCAAAGGACTTAGTAGATATTCTTCCTTCTGTCCAAGTCCCTACCGTTCTTAAGTGTAAAGGCAAGAGCTGGGACATGGCATATCGTGGACATGCTCCAGGTCGCAAGTTCTTCGATGGAGGCTGGAGAAAGTTTGCCATTGATAACCATTTGGGGGAGGGAGATGCTTGTGTTTTTGAGCTCATGGAAAACAGTGATGAAAAAATCATCTTTCAAGTTCAAATTCTCAAAGGTGATCTCCCTGAAGTGTGA 651 0.424 MKTVLEKLFDLYFLLLYIYTIALSPLASLPLLLFINGVTTALTHLQPSRIIITVLQGIRTCSKLKHDYSTINLNLKRLKKQVKFAAEKQAPLQKPPDSSANLSSDEIKPLSGNPFFHVVLSKSHVHRSCLMGPSKDLVDILPSVQVPTVLKCKGKSWDMAYRGHAPGRKFFDGGWRKFAIDNHLGEGDACVFELMENSDEKIIFQVQILKGDLPEV 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92549g00001 216 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 89 213 IPR044837 -
Stsc92549g00001 216 Pfam B3 DNA binding domain 116 206 IPR003340 GO:0003677
Stsc92549g00001 216 ProSiteProfiles B3 DNA-binding domain profile. 153 212 IPR003340 GO:0003677
Stsc92549g00001 216 SMART B3_2 116 208 IPR003340 GO:0003677
Stsc92549g00001 216 CDD B3_DNA 114 210 IPR003340 GO:0003677
Stsc92549g00001 216 Coils Coil 61 88 - -
Stsc92549g00001 216 SUPERFAMILY DNA-binding pseudobarrel domain 111 210 IPR015300 -
Stsc92549g00001 216 Gene3D - 98 211 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92549g00001 Stsc-Chr92549 7370 10155 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92549g00001 113 199 REM Transcription Factor Family AT1G49480 38.636 1.28e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc92549g00001 B3 1.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92549g00001 - - adu:107474771 222.246