Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92521g00002 ATGGATGATCTGGTCTTAGAAAACATTTGTGACCGTGTGAAGTCGCTTGTATTCACAAAGGGAGAAACAATCACTAGAGAGGGCGATCCAGTTCAAAGAATGCTATTTGTTGTAAGAGGTCACCTTCAAAGCAGCCAAGTCCTAAGAGATGGGGTCAAGAGTTGTTGCATGCTAGGCCCCGGAAACTTCAGCGGCGACGAACTCCTCTCTTGGTGCCTAAGAAGGCCGTTCATCGAGCGCCTCCCGCCGTCCTCATCCACGTTGGTCACACTTGAAACCACGGAGGCATTTGGCCTTGAAGCTGAAGATGTGAAGTATGTGACACAACATTTTAGATATACTTTTGTGAAGGAAAAAGTGAAAAGGAGTGCGAGGTATTATTCGCCAGGATGGAGGACTTGGGCTGCTGTGGCTATTCAATTGGCTTGGAGGAGGTACCGGCACCGGTTGACTTTGACTTCATTGTCCTTTATTAGGCCTAGAAGGCCTGTGTCAAGGTGCTCTTCCATGGAAGAGGACAGGCTTCGGCTCTATACGGCTATGTTAACTTCACCAAAGCCTAATCAAGATGATTTTGACGTTTGA 585 0.4752 MDDLVLENICDRVKSLVFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPVSRCSSMEEDRLRLYTAMLTSPKPNQDDFDV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92521g00002 194 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 191 - -
Stsc92521g00002 194 Pfam Cyclic nucleotide-binding domain 17 105 IPR000595 -
Stsc92521g00002 194 CDD CAP_ED 1 103 IPR000595 -
Stsc92521g00002 194 Gene3D Jelly Rolls 1 113 IPR014710 -
Stsc92521g00002 194 ProSiteProfiles cAMP/cGMP binding motif profile. 1 107 IPR000595 -
Stsc92521g00002 194 SUPERFAMILY cAMP-binding domain-like 1 111 IPR018490 -
Stsc92521g00002 194 FunFam cyclic nucleotide-gated ion channel 4 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92521g00002 Stsc-Chr92521 1839 10733 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92521g00002 1 193 Ion Channels AT5G54250 90.674 4.42e-128 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92521g00002 K05391 - cpap:110820661 378.637