Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92501g00001 ATGGATTCCTTTCTCTCACTCCAAACCCCAAACAACAACCACCCTCCGCCACCCCCACCAGGCCTCAACCCAACGCCGTTACTAGTCCCAAAGCCAGAGCCTCTGGACGATTTTTTCTCGTATTCCCAAGAATACCCTCACAGTCACTGGCTCCCTCAACAACAACCACAACCTAACAACAACAACAACGTGTTTGAGTTACACGCGCCACCCTTCGCGTCTGGTGGGCCCTCACAAGAACAAGAAGACTCGGAGCTCTACAACCACTTCTTCCGGGTCTCTCAGCTCTTCCGTACGGCTTTCTCTGATAATCTCTTCCAAAACGACGCCGTTCCTGAACCCGTCACGCCGCAACCGCAACCAGAGTTGCCGCCGAGTTTTCAAGATTCTATGTCGCATGCTTCTAATTCGCAGCCCGAACCCGAACCCGAACCCGAGGCAACGCCCGAAGCCGATTCACGCGCCTTGGTTACCGTTCCGCCGCCCGAGTCGTTGACCGTCGCGGCTTCGGCGAATCGCGCGAGCAAGAAGAAGGAGCTCGTGAGAGTCTCCGAGCTCAGCTTTCAGGAGCAGCTCCATTTCCGTGGTATCGTGAGACGAACGAGGATGCTCTACGACTCGATCCGCGTTCTCACCTCCGTCGAGGAGGAGAATAGAGCTGCCGCTGCCGCCGCCGAGAAGGCGAAGAAAGCTGCCGCTGCGGCTGCGGCTGCCGCTGTTTCTATTGCCGCCGTTGAATCGTCCGGTGCAGCTGAATCCACCGGGGAATATGCTGCCGCAGCTGAAACCATCGTCTCCGTTGCCGTGCCAGCTCCTGAATCTGCTGGAGAACAACAATCGGAAACTGACATTGGCGCCGGCGGTAATCCGGCGGAATCAGTCAACAATGACGAAGCTGAAGGGAAGAGGCGGCTGCGAGGGGATCTAATTGCAGCGCAAATGATGAAGAAGGAGCATCTATGGCTGAATCGCGATAAGCGAATCGTCGGAGCTATTCCTGGTGTTTATGTTGGCGATGTGTTCCTCTTTCGGATGGAATTGTGTGTCCTTGGATTGCACGGTCAGATCCAGGCTGGCATTGATTACCTGGCAGCTTCCATGAGTCCCAACAATGAGCCAATTGCGACGAGTGTCATTGTCTCCGGTGGCTACGAGGATGATATGGATGAAGGAGATGTCATAGTGTACACTGGACAAGGCGGGCAGGCCACGAATTCGGTGAGGCAGGCCACACACCAGAAGATGGAGAGTGGGAACCTGGCATTGGAGAGGAGCATGTATCATAATATTGAGGTGAGAGTGATTAGAGGGATGAAATATGAAGGAGCTGCCTCGAAATCCGGTAAGATTTATGTCTATGATGGATTGTATAGGATTACTGAATGCTGGTTTGATGTTGGAAAGTCTGGTTTTGGTGTTTTAAAGTATAAGCTTGTTAGGATTGAAGGGCAGGCTAAGATGGGTAGTGCTATTCTTAAGGAAGCTAGGGAGATTAGGAGAAGTGGAGTGGATTTTCAATCAATGTATTGTCTTTCTGTTGATATTTCAAATGGGAAGGAGAAGGTTCCGGTTAGACTCTTTAATGACATTGATGATAATAAGGATCCGCTCTATTTTGATTATCGTCGGACAACTGGTTTCCCACCATTCGTGTATCATCAGACCGGGACAGCTACTGGGTGTGATTGTGTCGGCGGTTGTAAAGATGAATGCTTTTGCAGTATGAAGAATGGTGGCAAGTTTCCTTATAATATGCAGGGGATCCTTGTGAGGGGGAAGCCTTTGATTTTTGAGTGCGGACCTTTTTGTAGTTGTCCGCCTAGTTGTAGGAATCGTGTATCACAGAATGGGGTGAAGAACAGGTTGGAGGTTTTTAGGTCTAGGCAGACGGGTTGGGGAGTAAGGTCCTTGGACCTTATTCAAGCTGGTTCTTTTATCTGTGAGTATGCTGGGGTTGTTTTGACTAGGGAGCAAGCACAGCTTTTGACGATGAATGGTGATGCGTTGATATATCCTAATCGGTTTTCTCAAAGGTGGGCAGAATGGGGTGATTTGTCTCCAGTAAACCCGGAATATCAGCGTCCATCTTATCCGTCAATTCCTCCTTTGGATTTTTCTCTGGATGTGTCAACAGTCAGAAATGTTGCTTGCTATATGAGCCATAGTTCAAGTCCAAATGTGATGGTTCAGTTTGTTCTGTTTGATCACAACAATTTGATGTTCCCTCACATTATGCTGTATGCAATGGAGAATATCCCTCCACTGAGGGAGCTCAGCCTTGATTATGGGGTAGCTGATGAGTGGACAGGAAAGCTCTCCATATGTAATGCTTGA 2334 0.4974 MDSFLSLQTPNNNHPPPPPPGLNPTPLLVPKPEPLDDFFSYSQEYPHSHWLPQQQPQPNNNNNVFELHAPPFASGGPSQEQEDSELYNHFFRVSQLFRTAFSDNLFQNDAVPEPVTPQPQPELPPSFQDSMSHASNSQPEPEPEPEATPEADSRALVTVPPPESLTVAASANRASKKKELVRVSELSFQEQLHFRGIVRRTRMLYDSIRVLTSVEEENRAAAAAAEKAKKAAAAAAAAAVSIAAVESSGAAESTGEYAAAAETIVSVAVPAPESAGEQQSETDIGAGGNPAESVNNDEAEGKRRLRGDLIAAQMMKKEHLWLNRDKRIVGAIPGVYVGDVFLFRMELCVLGLHGQIQAGIDYLAASMSPNNEPIATSVIVSGGYEDDMDEGDVIVYTGQGGQATNSVRQATHQKMESGNLALERSMYHNIEVRVIRGMKYEGAASKSGKIYVYDGLYRITECWFDVGKSGFGVLKYKLVRIEGQAKMGSAILKEAREIRRSGVDFQSMYCLSVDISNGKEKVPVRLFNDIDDNKDPLYFDYRRTTGFPPFVYHQTGTATGCDCVGGCKDECFCSMKNGGKFPYNMQGILVRGKPLIFECGPFCSCPPSCRNRVSQNGVKNRLEVFRSRQTGWGVRSLDLIQAGSFICEYAGVVLTREQAQLLTMNGDALIYPNRFSQRWAEWGDLSPVNPEYQRPSYPSIPPLDFSLDVSTVRNVACYMSHSSSPNVMVQFVLFDHNNLMFPHIMLYAMENIPPLRELSLDYGVADEWTGKLSICNA 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92501g00001 777 MobiDBLite consensus disorder prediction 11 31 - -
Stsc92501g00001 777 ProSiteProfiles SET domain profile. 620 763 IPR001214 GO:0005515
Stsc92501g00001 777 Pfam SET domain 631 763 IPR001214 GO:0005515
Stsc92501g00001 777 SMART set_7 620 769 IPR001214 GO:0005515
Stsc92501g00001 777 MobiDBLite consensus disorder prediction 46 67 - -
Stsc92501g00001 777 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 134 764 - -
Stsc92501g00001 777 ProSiteProfiles Pre-SET domain profile. 559 617 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc92501g00001 777 MobiDBLite consensus disorder prediction 272 300 - -
Stsc92501g00001 777 SUPERFAMILY PUA domain-like 312 493 IPR015947 -
Stsc92501g00001 777 Coils Coil 211 231 - -
Stsc92501g00001 777 MobiDBLite consensus disorder prediction 1 83 - -
Stsc92501g00001 777 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 107 777 IPR025794 GO:0016571
Stsc92501g00001 777 MobiDBLite consensus disorder prediction 125 141 - -
Stsc92501g00001 777 SMART G9a_1 325 484 IPR003105 -
Stsc92501g00001 777 Pfam Pre-SET motif 515 612 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc92501g00001 777 SMART preset_2 512 604 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc92501g00001 777 Gene3D - 327 488 IPR036987 -
Stsc92501g00001 777 SUPERFAMILY SET domain 506 775 IPR046341 -
Stsc92501g00001 777 Gene3D SET domain 489 776 IPR046341 -
Stsc92501g00001 777 Pfam SAD/SRA domain 329 484 IPR003105 -
Stsc92501g00001 777 ProSiteProfiles YDG domain profile. 330 480 IPR003105 -
Stsc92501g00001 777 MobiDBLite consensus disorder prediction 108 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92501g00001 Stsc-Chr92501 1595 4259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92501g00001 306 765 Su(var)3-9 homologs AT5G04940 42.151 4.69e-108 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc92501g00001 SAD_SRA 4.4e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92501g00001 K11420 - aip:107626851 1170.22