Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92487g00001 ATGATTACTATTGTAGCACTACCTTCAATGAAATCTATAGTTCCTTGCTTGAAGAATTCTCTGCTCCACAGTGACACTACTACTACTCCACCAACATTATTGATGACTCATCATCATCATCAAGAAGATTATAATAATAATCATCATCATCATCATAATAATGACAATCCACTATTGGTGTCTATGATGATGGAAGAAGAGTTTCAAAGTTTGGAGATGCAAAGAGAATGCAAAACGGAGCCAAGTCAATCATCTTCTCCGGTTTTTAACTCAGAAAGAAACAACAATAATGATAATATTAAAAATAATAGAGCAAACAAAATTGAGGGCCAACCCTCCAAGAATCTAATGGCTGAGAGGAGAAGAAGAAAGAGATTGAATGATAGGCTCTCCATGCTTAGATCAATTGTCCCCAAGATAAGCAAGATGGACAGAACATCTATACTTGGAGACACCATTGATTACATGAAGGAACTACTAGACAAGATCAACACTTTGAAAAGAGAAATACAAGTGGCGGATGATGATGATTCAAATAATGGCATTTTATTCAATGACATACGCCCAAATGATATCTTAGTGGGAAATTCTCCCAAGTTTGATGTGGAGAGGAGGAATAATAATGGAGAAACAAGGGTTGAGATCTGTTGTGGTGGGAAGCCAGGGTTGTTGCTATCTACAGTGAACACTTTGGAAGCATTGGGATTTGAGATTCAACACTGTGTTATAAGCTGTTTCAATGACTTCACAATGCAAGCTTCTTGCTCAGAGGAATTGGAGCAGAAGACAATGGTGAGTTCTGAAGATATAAAGCAAGCACTATTTAGAACTGCAGGATATGGAGGAAGATGTTTCTGA 858 0.373 MITIVALPSMKSIVPCLKNSLLHSDTTTTPPTLLMTHHHHQEDYNNNHHHHHNNDNPLLVSMMMEEEFQSLEMQRECKTEPSQSSSPVFNSERNNNNDNIKNNRANKIEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLDKINTLKREIQVADDDDSNNGILFNDIRPNDILVGNSPKFDVERRNNNGETRVEICCGGKPGLLLSTVNTLEALGFEIQHCVISCFNDFTMQASCSEELEQKTMVSSEDIKQALFRTAGYGGRCF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92487g00001 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 171 IPR036638 GO:0046983
Stsc92487g00001 285 Gene3D - 96 175 IPR036638 GO:0046983
Stsc92487g00001 285 Pfam Helix-loop-helix DNA-binding domain 116 159 IPR011598 GO:0046983
Stsc92487g00001 285 CDD ACT_UUR-ACR-like 211 252 - -
Stsc92487g00001 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 159 IPR011598 GO:0046983
Stsc92487g00001 285 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 41 279 - -
Stsc92487g00001 285 Coils Coil 156 176 - -
Stsc92487g00001 285 SMART finulus 116 165 IPR011598 GO:0046983
Stsc92487g00001 285 MobiDBLite consensus disorder prediction 76 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92487g00001 Stsc-Chr92487 6060 8070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92487g00001 104 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 63.388 5.54e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc92487g00001 HLH 5.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92487g00001 - - vra:106764382 304.679