Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92472g00001 ATGCATGTTCCAGAAGTGCAAATTGAAGGTCCACCTGATACATATCCGTTGTTGATGGAGCGCCTTGGTAGCTTGAACACGATCGAGCAGCCAGAGAGCTTGAATGGCAATCAGCATATCATAGACATTAACGTAGCTGGAAGCAGTGACGCTTCCACTTCAGGATCAGCTCATGATAGACATTCTAATGGTGTAAATACATCACAGGATGTAGAGAGAGCTGGTAGCGTGAGAGTACCTGTTTCCCAGCCTTCAGTTTTATCCAACAATGGATCAAATTCTAGGAATTCTTCGTTCATCAGACGTGGAGATTCACGACGGAGTAGGAGTCCAGTGCATTCAGGGCTGTGGATATCTGTAGAGCTAGTACTCTTATTAAGCCAAATCGTGGCATCAATTGTTGTATTGTCTTTGTCAAGGCACGAGCATCCACATACCCCATTGTTTGCATGGATTGTGGGTTATGCAAGTGGATGTGTTGCTACCCTACCTCTGCTTTATTGGCGGTATTATCATCATAACCAAAGTCGGGATCAAGATTCATCCCAGACACGTCAATCATCTCCTCGGGTTAATGATCCTTCCGGGACATTTCATTCCAGTTCCAGAACTAATGGAGGAGCAGATGGTCATGCTGCTGCTTCAATACCCAGAAGCAGTCAAGCTTCACCATTGACAAACAGAAGAATGAAGACACTAGTGGAATACTTCAAAATATCTTTAGATTGCTTTTTTGCTATATGGTTTGTTGTTGGAAATGTATGGATCTTTGGAGGACATTCGTCTCCTGAAGAAGCTCCTAACTTGTACAGGTTATGTATAGTGTTTCTTGCCTTTAGCTGTATTGGCTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTTCCTTGTATTATCTCCATCCTTGGTGTTAGAGAGGATATGTCACAAAACAGAGGGGCAACTTCTGAATCCATAAATGCCCTGCCAACTTACAAGTTCAAGATGAAGAAAAATAGAAGAAGTAGTGATGCTAACTCAGCTGCTGCTGATGGGGGAGTTGTGGCTGCAGGAACTGAAAAGGAGCGAGTGATATCTGGAGATGATGCGGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGCTGCGAGAATTGCCTTGTTCTCATCTTTTTCACAAAGATTGTGTAGACAAGTGGTTAAAAATAAACGCATTGTGTCCTCTTTGCAAGAGTGAGGTTGGTGAGAACTTAACCGGGTCAGCCACTGCAGAAGGTGCGAGCCAATAG 1284 0.4361 MHVPEVQIEGPPDTYPLLMERLGSLNTIEQPESLNGNQHIIDINVAGSSDASTSGSAHDRHSNGVNTSQDVERAGSVRVPVSQPSVLSNNGSNSRNSSFIRRGDSRRSRSPVHSGLWISVELVLLLSQIVASIVVLSLSRHEHPHTPLFAWIVGYASGCVATLPLLYWRYYHHNQSRDQDSSQTRQSSPRVNDPSGTFHSSSRTNGGADGHAAASIPRSSQASPLTNRRMKTLVEYFKISLDCFFAIWFVVGNVWIFGGHSSPEEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGATSESINALPTYKFKMKKNRRSSDANSAAADGGVVAAGTEKERVISGDDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGENLTGSATAEGASQ 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92472g00001 427 MobiDBLite consensus disorder prediction 47 73 - -
Stsc92472g00001 427 MobiDBLite consensus disorder prediction 47 111 - -
Stsc92472g00001 427 SUPERFAMILY RING/U-box 360 415 - -
Stsc92472g00001 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 417 IPR013083 -
Stsc92472g00001 427 SMART ring_2 368 408 IPR001841 -
Stsc92472g00001 427 FunFam E3 ubiquitin-protein ligase 351 417 - -
Stsc92472g00001 427 MobiDBLite consensus disorder prediction 180 208 - -
Stsc92472g00001 427 ProSiteProfiles Zinc finger RING-type profile. 368 409 IPR001841 -
Stsc92472g00001 427 MobiDBLite consensus disorder prediction 81 99 - -
Stsc92472g00001 427 MobiDBLite consensus disorder prediction 178 223 - -
Stsc92472g00001 427 Pfam Ring finger domain 368 409 IPR001841 -
Stsc92472g00001 427 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 29 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92472g00001 Stsc-Chr92472 1168 7218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92472g00001 13 420 C3H Transcription Factor Family AT1G80400 48.095 1.91e-141 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92472g00001 - - gmx:100778728 623.239