Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92468g00001 ATGGATCAAGCGCGATCATCTTCTGGGAACAACAATGGCGACGACAATGTGGGAATTCCCGATGACCTCAGGTGCAAGCGTTCCGACGGCAAGCAGTGGCGCTGCACCGCCATGTCCATGCCAGACAAGACCGTCTGCGAGAAGCATTACATCCAGGCCAAGAAGAGGGCCGCCAATTCCGCCATGAGAGCCAACCTCAAGAAGGCCAAGCGCAAGTCTGGAGACTCCGAGGGTTATCTTGAAACCAAGAGTGACGATTTCGATATTCCTCTCTCCGCCATGAAGCACGGCGGTGGGGAGCATAGCTCTGGTGCTGGCGGCAGCAAGTTGTTGGATAAGGTGGGGAAGAATCAGTTCAGGTATGTTCCCAAGAAGGGGGCCATCCCCGGACGGTCCTCGCTGGGGAAGCCAGACGAGGAGGATGAGGATGAGGATGAGGATGGGGAAGATTACGAAGGAGAGGAGGAGGAGGAGGAGGAGGCGGAGGATGTGCCTCTCTATGAGGAGAATTGGGCGGGTCGCGAGTCGCCTGAGCCGGCTTCTGGTGGGGACTCGACCAGGAAGAGGAGGAGCTTGGAGGCCACTAATGCCACTAATGAATATTTTGATGCTAGCACCGATTCCTCGGAGGAGACTGGTGACACTGGTGGGCAGACATGCCATCAGTGCCGGAGGAATGACAGAGACAGGGTGGTTACTTGGTGCCAGCGGTGTGATCGGAGAGGATATTGTAATAGCTGTATATCAACTTGGTACTCAGACATTTCGCTGGATGAAATTCAGAGAATGTGTCCTGCGTGCCGTGGTATTTGTAACTGTAGAATTTGTGTACGTAGTGATAATTCAATAAAGGTTCGGATACGGGAGATACCTGTTCTAGATAAATTACAATATCTCCACTCGCTGTTGTCGGCAGTGCTTCCTGTAGTAAAACAGATCCATCAAGGACAGTGTTTTGAAGTTGAGCTTGAGAAGAAGTTGCGTGGTGCTGACATAGATCTTCCCCGGATAAAATTGGGGGCAGATGAGCAGATGTGCTGCAATTTATGTAGGATACCCATTACTGATTATCATCGGCGCTGTCCAATTTGCTCATATGATTTATGCCTTAATTGTTGTCATGACCTTCGAGAAGCAACTTCAAATCCCAACAAAGAACCGCAAACAGAATTAGCGAAAGCTTATGACCAAAACATATTAAGTAAGTTTCCTCATTGGAGATCTGACGATAATGGAAATATTCCATGCCCCCCTAAGGAATATGGTGGGTGTGAATATTCCTCGTTAAATTTAAGCAGGATTTTCAAGAGAAATTGGGTTGCAAAGTTGGTGAAAAATGTAGAAGAAATGGTTGGTGGATGTAAGATTAATAATGCTGATGATCTACCAGAAACTGAGTTGAATGCTCTCAGATTGCACAAATTTTCTCATAGAGAGACTAGTGATGATAACTATCTTTATTGTCCTGCATCTGAAGATCTCATAAAAGATGGGATTGGAAAATTTAGAAAGCACTGGAAAGCCGGTGAACCCATTATTGTTAAGCAAGTGTTTGATAGGTCATCCTTTTCTAGCTGGGATCCGTTGGTCATCTGGAGAGGGATTCTAGAGACAACAGATGAGAAAATGAAAGATGAAAACAGAGTGGTTAAGGCCATAGATTGCTTAGATGGGTCTGAGATTGATATTGAGCTTAGTTACTTCATGACTGGTTACACTGAGGGACGTACTCATGAAAATGGTTGGCCACAGTTATTGAAGTTGAAGGATTGGCCTTCACCTAGTGCATCTGAAGAGTTTCTCTTGTACCAAAGACCAGAATTTATCGGCAAACTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATTTATATATCTTATGGTATCAGTCATGAACTTGGTAGAGGTGATTCAGTGACCAATCTCCACTTCAATATGCGTGACATGGTGTACCTGTTGGTCCATACAAGTGAAGTAATGCTGAAGGACTGGCAGAGAAGTAAAATTGAAATAATCCAAAAAGAATACAAGGAGTCAGAGGTGAAGGAATCACCTGGGGTTCAACAAATGTGTTCTAGCAGGAGTTCACCTAACATGTCATTTGGTACAGCAAATAATGGGCTGGATTTGGAGTCAAACCAGACTAAGTCAATGGATCAAGGATTTAGTCATTCTAATTCTGATGGGAATATGGTCAATCATGAACATCCATTCGAACAAAATGGAGATTTCTCTGAGAAGAAGCATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGTTGAATGAATATTTGAAAATACATCGGAAGGAATTTGGAAAGCCAAATGATGCATTAAATGAATATGTTACATGCCCTCTTTATGACGGAGCTATTTTTCTTGACAGACACCAAAAAAGAAAGCTGAAGGAAGAATTTGGAGTGGAGCCCTGGTCATTTGAACAGAATTTGGGGGAAGCTATCTTTGTTCCTGCTGGTTGCCCTTTTCAAGCAAGAAATGTTCAGTCCACTGTTCAGTTGGGGCTTGATTTCTTATCTCCTGAAAGCTTGGGAGAGGCTGTAAGATTGGCAGAGGAAGTCCGCAGTCTACCGAATGAACATGAAGCAAAACCTCAAGTATTGGAGGTTGGGAAGATATCTCTTTACGCCGCAAGTTCATCCATCAAAGAGGTTCAGAAACTTGTACTTGATCCGAAGCTTGGTGCAGATATCGGATATGGAGACCCTAATTTGACTGCAATGGTATCTGAGAATTACGAGAAGATGGTTAAGCGAAGGCAGATTACTTGCACTTGA 2871 0.4458 MDQARSSSGNNNGDDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSGDSEGYLETKSDDFDIPLSAMKHGGGEHSSGAGGSKLLDKVGKNQFRYVPKKGAIPGRSSLGKPDEEDEDEDEDGEDYEGEEEEEEEAEDVPLYEENWAGRESPEPASGGDSTRKRRSLEATNATNEYFDASTDSSEETGDTGGQTCHQCRRNDRDRVVTWCQRCDRRGYCNSCISTWYSDISLDEIQRMCPACRGICNCRICVRSDNSIKVRIREIPVLDKLQYLHSLLSAVLPVVKQIHQGQCFEVELEKKLRGADIDLPRIKLGADEQMCCNLCRIPITDYHRRCPICSYDLCLNCCHDLREATSNPNKEPQTELAKAYDQNILSKFPHWRSDDNGNIPCPPKEYGGCEYSSLNLSRIFKRNWVAKLVKNVEEMVGGCKINNADDLPETELNALRLHKFSHRETSDDNYLYCPASEDLIKDGIGKFRKHWKAGEPIIVKQVFDRSSFSSWDPLVIWRGILETTDEKMKDENRVVKAIDCLDGSEIDIELSYFMTGYTEGRTHENGWPQLLKLKDWPSPSASEEFLLYQRPEFIGKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISHELGRGDSVTNLHFNMRDMVYLLVHTSEVMLKDWQRSKIEIIQKEYKESEVKESPGVQQMCSSRSSPNMSFGTANNGLDLESNQTKSMDQGFSHSNSDGNMVNHEHPFEQNGDFSEKKHPGVLWDVFRRQDVPKLNEYLKIHRKEFGKPNDALNEYVTCPLYDGAIFLDRHQKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEEVRSLPNEHEAKPQVLEVGKISLYAASSSIKEVQKLVLDPKLGADIGYGDPNLTAMVSENYEKMVKRRQITCT 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92468g00001 956 MobiDBLite consensus disorder prediction 1 15 - -
Stsc92468g00001 956 ProSiteProfiles WRC domain profile. 19 63 IPR014977 -
Stsc92468g00001 956 SMART cupin_9 601 886 IPR003347 -
Stsc92468g00001 956 Pfam JmjC domain, hydroxylase 773 865 IPR003347 -
Stsc92468g00001 956 Gene3D Cupin 484 895 - -
Stsc92468g00001 956 MobiDBLite consensus disorder prediction 195 220 - -
Stsc92468g00001 956 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 21 920 IPR045109 GO:0032454|GO:0033169
Stsc92468g00001 956 ProSiteProfiles JmjC domain profile. 594 886 IPR003347 -
Stsc92468g00001 956 SUPERFAMILY Clavaminate synthase-like 503 889 - -
Stsc92468g00001 956 ProSiteProfiles Zinc finger RING-type profile. 220 268 IPR001841 -
Stsc92468g00001 956 MobiDBLite consensus disorder prediction 57 220 - -
Stsc92468g00001 956 MobiDBLite consensus disorder prediction 68 90 - -
Stsc92468g00001 956 MobiDBLite consensus disorder prediction 138 166 - -
Stsc92468g00001 956 MobiDBLite consensus disorder prediction 1 25 - -
Stsc92468g00001 956 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 216 281 IPR018866 -
Stsc92468g00001 956 Pfam WRC 20 60 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92468g00001 Stsc-Chr92468 741 8096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92468g00001 20 60 GRF Transcription Factor Family AT3G13960 46.341 3.44e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc92468g00001 JmjC 1.6e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92468g00001 K15601 - gmx:100792166 1431.39