Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92460g00001 ATGAGGGGAGAGAGGATAACTGAGAGTGGAAAACACGGTGAAGGCTCCGGCCATGCCGAAGGAAGAAATAAGAGGGGGAGTGTGGGTGGGTTTGTATCTGGTGTACGGAGGAGGGGAAATGTGGGTAGGAATTGGAATCACAGGATCGTTAGAACAGAGTCCCATACTATTTTTGTGGATAATCTCCCCGCAGGAGTCGCAAAAAGGGAATTGTACAAGGAATTTGGCAAGGATGGCTCTGTGAATGATATCTTCATGTCAAGAAAATCGAGACGGAATGCGAACTGCCCTTTTGCATTTGTAAGGTTTAATGAGTACGCAGGGGCGATGAGAGCAATAGATAGGTTGAATGGAACGTTCTGGGGCGAGGGTAAACTATTCATTACACTGTCGAAATTCAAACGAGATGGTGGAGTACATGGGGGATGCATAACGAAGTGGCTTGGCCAAAGCAGGGATAGAGATACGTGCAGAAATGGGGTAAAGGTGATGAATTTTCTTTTGGATGAATGGAAAGGACCAAGGGAGATTGAATGTAGGGATGTGGGACCTTACAGATGCTTGGACGACAAAACACAAGAGGCAAAATCATTCAGCATGGCAAGGATACTATTAGACTGCTTCCAGTGGGAGAAAATTCACGAAGAGGATGATGACTCTGTCTCGATGGATGACCCCAGATCGATGTCGGAAGGGGAAGAAACTCTGATAACAGTTGAAGAGACACCAGCCACCACCAGTAATTCGAATTCAAATTCAAATTGGAAGAACGTTGATGACCCTCTAATCAATGTAATCATTAACTCCAAATGGAATAATGTGCAAGATTTAATTCATGAGAGAGAGTTTGTCAGCCATGAAGATGGAGAGTCTGTGTTTGAAGTATTGAGTATGAAGGTGATTCCCGAAACATGTTATGTGAAGGGTGTGAGGTGTGAATTAATGGGCTGCGATCCGGTGATTATTGAAGCCCAAATTGCAGCATCCAAAAAGAAGGAAGTTCATATGGGTATGGACCATATTGGTAATGGACCGGTTGTTAACGACAGAAGAAGTGTAGATGAGAATGGATTGGATTCGGGTTCCTCTAACACCTACCCGTTTCCTCCCGGTTTCGGACCTGAGGGTGCGAGAGGGGCTGACCAACAGATTGTGAGTGGGTGCTTGGTTGTTTGGGAGGATAGAATACCGGAGACCCCGGCGATAGTAGAAAAGGAGGAGGTGAGTAACGAGACCCTGTATCGCATCAATGTGTTAGCAATTAAGGATGCTCTGGTTGGGGACGATGCTGCGAAGGACTCTGTCGTAGAGGATAAGTCCTTGCCTGCGCAGATCGAGAACAGTATTGCTGCGTGCAATGATGAGGAGTCGGTGAGCGACGAAACCCTTTACCTCATCAATAAGTCTGCAAGAGTAAGAGTTGAGAATGGAGAAGACAAGTTTGGTCTGGTGGGGGAACAAAATTCAAATGATGGCAGTGAATGCAGTAAAGAGCTAGAAGATATTGAAGTGCAACTCAATTAG 1524 0.456 MRGERITESGKHGEGSGHAEGRNKRGSVGGFVSGVRRRGNVGRNWNHRIVRTESHTIFVDNLPAGVAKRELYKEFGKDGSVNDIFMSRKSRRNANCPFAFVRFNEYAGAMRAIDRLNGTFWGEGKLFITLSKFKRDGGVHGGCITKWLGQSRDRDTCRNGVKVMNFLLDEWKGPREIECRDVGPYRCLDDKTQEAKSFSMARILLDCFQWEKIHEEDDDSVSMDDPRSMSEGEETLITVEETPATTSNSNSNSNWKNVDDPLINVIINSKWNNVQDLIHEREFVSHEDGESVFEVLSMKVIPETCYVKGVRCELMGCDPVIIEAQIAASKKKEVHMGMDHIGNGPVVNDRRSVDENGLDSGSSNTYPFPPGFGPEGARGADQQIVSGCLVVWEDRIPETPAIVEKEEVSNETLYRINVLAIKDALVGDDAAKDSVVEDKSLPAQIENSIAACNDEESVSDETLYLINKSARVRVENGEDKFGLVGEQNSNDGSECSKELEDIEVQLN 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92460g00001 507 MobiDBLite consensus disorder prediction 1 21 - -
Stsc92460g00001 507 CDD RRM_SF 57 128 - -
Stsc92460g00001 507 SUPERFAMILY RNA-binding domain, RBD 51 155 IPR035979 GO:0003676
Stsc92460g00001 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 120 IPR000504 GO:0003723
Stsc92460g00001 507 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 56 227 - -
Stsc92460g00001 507 MobiDBLite consensus disorder prediction 483 507 - -
Stsc92460g00001 507 MobiDBLite consensus disorder prediction 1 34 - -
Stsc92460g00001 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 133 IPR000504 GO:0003723
Stsc92460g00001 507 Gene3D - 36 162 IPR012677 -
Stsc92460g00001 507 SMART rrm1_1 56 129 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92460g00001 Stsc-Chr92460 2504 4537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92460g00001 31 128 Eukaryotic Initiation Factors Gene Family AT1G22760 31.633 1.80e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92460g00001 K21123 - ahf:112794598 79.7221