Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92430g00002 ATGGAAGCAGACAAGGAGGAAATGGAATCACTGCTTGGTCAAGCTGAAATATGGAAGTTCATGACGAGTTTCACAGACTCAATGGCACTAAAATGCGCCGTGGAGCTCCGCATCGCCGACATAATCGACCGCCACTGCGAGCCACTCCCGTTGTCGAAGATAGCCGAAGAAATGGAAGACGCGGCTTGCCCTGAGATGTCGATGCTGGAAAGAATAATGAGGGTTCTTGTAAGAAGAAATATCTTCAGTTGTCAGATCTCAGAAAACGGGGAAAGGGTGTACGGAGGCACACGGGCGTCGAAGTGGATTGTACGTGACGCAAAGATGACGTTGGCACCGATGTTGCTGCTTGAGAATCATCCCATTCACTTGAACCCTGGTCACTACGTTAGTGAGTGTATAAGGGAAGGAATGAAGAATGGCACTGCCTTTTTCATGTGCCATGGCCATGAACAATTTGTCATGACAGGCCTGGACCCTGAATATAACAGGTTGTTCAATGAGGGTATGCTTTGCACTGCAAGGATTGTGTCAAAGGCTGTGATATCAGGGTACAAAGATGGGTTCAAAGAGATTAAGACATTGGTTGATGTTGGAGGTGGAATTGGAGGTTCACTCTCTGAGATTGTGAATGCATTCCCACACATCAAAGGTATTAACTTTGATTTGCCTCATGTTGTTGCAACCGCACCTATTTATGATGGTATCACCCATGTTGGTGGAGACATGTTTGCTTCCATTCCTCAAGCAGATGCTATTTACATGAAGTGGGTTCTACATGATTGGAGCGACGAGCACTGCATGAAGATATTGAAGAACTGCAAGAAGGCAATAGGAGAGAGTGGGAAGGTGATAATCGTTGATCATGTTCTTAAGCCTGAAGGAAACGATCTGTTTGATGACACAGGCTTTGCCTTCGACATGATGCTTCTTGCACACAACAGTGGTGGCAAAGAAAGGACAGAAGAAAATTGGAAGTGGCTCTTTAAGCAAACAGGCTTCCCTCGCTACAACATCATCAACATCAATGCTCTTCCATCCATCATTGAGGCATTCCCAATCTGA 1065 0.4573 MEADKEEMESLLGQAEIWKFMTSFTDSMALKCAVELRIADIIDRHCEPLPLSKIAEEMEDAACPEMSMLERIMRVLVRRNIFSCQISENGERVYGGTRASKWIVRDAKMTLAPMLLLENHPIHLNPGHYVSECIREGMKNGTAFFMCHGHEQFVMTGLDPEYNRLFNEGMLCTARIVSKAVISGYKDGFKEIKTLVDVGGGIGGSLSEIVNAFPHIKGINFDLPHVVATAPIYDGITHVGGDMFASIPQADAIYMKWVLHDWSDEHCMKILKNCKKAIGESGKVIIVDHVLKPEGNDLFDDTGFAFDMMLLAHNSGGKERTEENWKWLFKQTGFPRYNIININALPSIIEAFPI 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92430g00002 354 CDD AdoMet_MTases 194 291 - -
Stsc92430g00002 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 351 IPR029063 -
Stsc92430g00002 354 Pfam Dimerisation domain 28 77 IPR012967 GO:0046983
Stsc92430g00002 354 PIRSF O-mtase 1 354 IPR016461 GO:0008168
Stsc92430g00002 354 Pfam O-methyltransferase domain 129 334 IPR001077 GO:0008171
Stsc92430g00002 354 Gene3D - 1 103 IPR036388 -
Stsc92430g00002 354 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 18 353 IPR016461 GO:0008168
Stsc92430g00002 354 SUPERFAMILY "Winged helix" DNA-binding domain 12 106 IPR036390 -
Stsc92430g00002 354 Gene3D Vaccinia Virus protein VP39 105 354 IPR029063 -
Stsc92430g00002 354 PANTHER O-METHYLTRANSFERASE 14 336 IPR016461 GO:0008168
Stsc92430g00002 354 FunFam O-methyltransferase family protein 105 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92430g00002 Stsc-Chr92430 6932 11331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92430g00002 28 340 Monolignol Biosynthesis Gene Families AT5G54160 40.000 4.46e-78 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92430g00002 K22588 - gmx:100800801 588.186