Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92380g00001 ATGGAGCCAGCAGTGCCTTGTGAGCTTGTCAGGGGTTACTTGGACTTTTCCCCACATGCATGGAATATCATTCTGATTAAGAGGGGTGGTACGTGGGTCCGAATGCTGGTTGACGCTTGTCGACCCCATGACATAAGAGAAGAGAAGGATCCTGAATACTTTTGCAGGTATATACCTCTAAGTCGAGCCACAATTCCCCTTTCAACTAGTGGAAGTCATGGTCCTGATCGGTTGTTTCCATCTCTCTCTACTTGTGATGAACATGAGAAAAAAGCTTCGACTACTTTAGTTCGGTGCAAAATTGGGTCAGTTGAGGCTGCAGCTAAGGTGCGTACTTTGGATGTGCAGGGAAGTTCACCAACCGAAATTAGAAATTTTGATTATAATTGTTTGGGAGAAATTAGAATTCTAGGTTCTTTAAAACATCCCTGCATAGTGGAAATGTATGGACATGAAATATCATGCCAATGGACTTTCACAGCTGATGGCAAGCCTTGCAATCGCATATTAAGATCTGCGATTTTTATGGAGTATGTTGATGGTGGTTCCTTAAAGAACTATTTAGAAAAGTTATCAGAAGCTGGCGAAAAACATGTCCCTGTGGAATTGGCTTTGCATATTGCCAGAGATGTCTCCTGTGCCTTGTCAGAGCTGCACTCAAAGCACATAATTCATCGAGACATTAAAAGTGAAAACATCCTGTTTGATTTGGATAGAAAGACTGATGATGGAAATCCCACTGTGAAGTTGTGTGATTTTGACAGTGCAGTGCCACTAAGATCACCTTTGCATGCTTGCTGTATTGCTCATGTTGGAACTCCACCTCCTTGTGTATGTGTTGGAACACCACGGTGGATGGCTCCAGAGGTTATGCGGACTATGTATGAAAAGTTCACTTATGGATTGGAAGCTGATATTTGGTCATTTGGATGTTTACTTTTGGAGATGCTGAGTCTGCAAATTCCATATGATGGAGTACCTGATTCAGACGTCCATGACAGTCTGCAGATGGGTAAACGACCTCGATTAATAGATGAGCTGGAGGCATTGAGTCCAATGAGTGAACCCTCCGTAATTCAATCTGGTGAAGACCTCGAAAAATCAGATGCAGAGGCAGACTTGTTGAAATTCCTTGTTGAGTTGTTTCACAGATGCATGGAAGAAAATCCTGCAGACCGTCCTACAGCTAAAGAAATCCATGAAATGCTGCTTGCACGCACAGGCCGTTTACAAGCACAAGATAATAGGAAAATTTAG 1257 0.4272 MEPAVPCELVRGYLDFSPHAWNIILIKRGGTWVRMLVDACRPHDIREEKDPEYFCRYIPLSRATIPLSTSGSHGPDRLFPSLSTCDEHEKKASTTLVRCKIGSVEAAAKVRTLDVQGSSPTEIRNFDYNCLGEIRILGSLKHPCIVEMYGHEISCQWTFTADGKPCNRILRSAIFMEYVDGGSLKNYLEKLSEAGEKHVPVELALHIARDVSCALSELHSKHIIHRDIKSENILFDLDRKTDDGNPTVKLCDFDSAVPLRSPLHACCIAHVGTPPPCVCVGTPRWMAPEVMRTMYEKFTYGLEADIWSFGCLLLEMLSLQIPYDGVPDSDVHDSLQMGKRPRLIDELEALSPMSEPSVIQSGEDLEKSDAEADLLKFLVELFHRCMEENPADRPTAKEIHEMLLARTGRLQAQDNRKI 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92380g00001 418 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 40 407 - -
Stsc92380g00001 418 Pfam Protein kinase domain 127 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc92380g00001 418 Gene3D Transferase(Phosphotransferase) domain 1 92 417 - -
Stsc92380g00001 418 FunFam Leucine-rich repeat protein kinase family protein 128 409 - -
Stsc92380g00001 418 SUPERFAMILY Protein kinase-like (PK-like) 125 403 IPR011009 -
Stsc92380g00001 418 SMART serkin_6 86 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc92380g00001 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Stsc92380g00001 418 ProSiteProfiles Protein kinase domain profile. 62 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92380g00001 Stsc-Chr92380 4034 7528 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92380g00001 133 407 MAP Kinase Kinase Kinase AT1G63700 29.856 2.75e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Stsc92380g00001 Pkinase 4.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92380g00001 - - tpra:123913087 707.212