Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc92353g00001 ATGTCTTATGAAAACCAGGAACCCCAATCCACATTCAAACCCTACAGAGCAATGATGTGTGATGTGTACATTAGTTGCCAACCCCAAATCCCTCAAACGTGTATTTTAGATCTCTATGACATTGGTTGCGAACCCCATGACCCTCCTCATTCTCTTATTTCAGATCTCTGTGACGCACTCAATCATTCTGGTGTATATGCTTTTCTGGACCACACAGAGCCCAAGACTAATGACGTTTTCTTATCTGACGCAATCGAAGGGTCCAGAGTTTGTATCATAGTTTTCACAATAGATTATGCTAAATCAACCCTGTGTTTGCAAGAGCTCTTGAAAATAATGGAGTGTCGTAGCAGCAAAGGTCAACGTCTTGTCCCCGTCTTCTATTGCTTAGATCCTTCAGAAGTATACAATCTAAGCGGTTATTTTGGAAAAGTTTTCTTCGATACTCTTCAAAGAAACTCAACAGATGAAAGCAAGGCGTTGACTTATAGTGCTGCGCTTCGAGATGCTGCTGCCATTTCACCCATGTTTCTGTTGGATCCCTGGTATAAAAGCAAAGATATAGAAAATATTGTTGAACATGTTACCTCCCTATTAGATTCAACAGACTTATTCGTTGCAGAGCATCCAGTGGGAATAGACTGGCGTGTGCAAGATTTGATTCGACTGATAAATGATAATCAGAGATCAGATGATGTTCTTGTTATATCGATATGGGGAATGGCGGGGATAGGTAAAACTACAATTGCCAAAGCCCTCTACAATCAAATTAGCCACAATTTTGATGTAAAAAAGTTTGTGTCAAACATCAAGGAAAGGATAGGTCTTGATGGATTCTTTCGTGTAACTTTACAAGAGGAGCTTCGCTGTTTTCTTTGGCAGAAAGTTAAAAGAAAGGCGTGTAACTCTGACTCAACAAGAGATATGTGGTGGGAAGGACTTCGTCGCATAAAGGTACTTCTTGTACTTGACAATGTGAGAAGTGAAAAAGAACCAAAGGTTTTGCCGGTGGCTCTTGAATGCTTTGGTCCAGGGAGTATAATAATCATCACTACAAGGGCTAAACATGATCAACTTCATGAAATTGGAGTTAATCACATATACAGGGTGAAAGAAATGGACTATAACGAATGTGTTGAGCTTTTTAGTTGGAGTGCATTCAAGAAAGCAACTCCTGAAAGAAGTTTTTCTGGGCTTATTAATTATGCAATTGAATTTTCTGATGGACTGCCACTGGCTCTTGTGGCTGTTGGCTCTGCATTATCTGAAAAAAGTATAGAAGAATGGGATAATGTATTGGATAGGCTCAAAAGGTTTCCCCTTCAAGATGTGTGCCAGATTTTAAAAGAAAACATTCATTCTGTTGGATTTGAAGAGAAGAAAATGTTTCTTGAACTAGCTTATTTGAGCCATCTATTTATTGGAATGGATCGAAATGATGTAAGTCAGATATTGCAAGAAGCTGGTCGTGATGCAAAAGCAATTAAAGGGCTTCAAGATCATAGTCTTGTGTGGTTTGAGGAGGACAAGCTTTGCATGCATAGTTTGCTGCAACACATTGGAAGAGAAATGTATATGAAGGAATCATCCATTGATCCTCAGCAAAGGCCATATGATATATTCTTGAGCTTTCGAGGCATAGAAACTCGTTCAAAGTTCGTCTCACATCTTACTGCATCTCTTGAAAATGCTAGTTTCTATGTTTTCAAGGATGAAAATGGACTAGCAAGAGGGGAAAATATCTCAATCTCGCTTCTGAAAGCAATTGGAGAGTCTAAAACCTCTGTAATTATTTTGTCACCAAATTATGCATCTTCAAGATGGTGTTTGCAAGAGTTGGAAGATATCATGCTATGTTGCAAAAACAGAGCTCAAAAGGTACTGCCAGTATTCTACCATATAGAACCCTCAGAAGTGCGAAATCAAACTGGCGAGTTTGGAGAAACTTTTGAAATTCTTATGGAAAGATCAGAGAAAATAAAACGCAAGGAGAAAAGTTGGAGGAAAGCTCTCCGCGAAGTTGGATGCCTATCAGGTTTTGTTGTCCGAAAATCCAGTAATGAAAGTGAAGATATTAAGAACATTGTTGAACATGTTACTCATATGCTGGACATGAAGAAATTGTTCGTTGCTAATCATCCGGTAGGAGTGGAATCTCGTGTCGAAGAGGTGATTGAACTATTAAGAGACTGGCAACAAGAAAATCCTGTACTACTAGGTATATGGGGCATGGGAGGCAGTGGCAAAACAACCATTGCTAAAGCAGTTTATAATAAAATTTTCCGGGAATTTGAAGGTCGGTGCTTCCTCTTAAACATAAGAGAAGTTTGGGATCAAGACAATGGAATTCTTCATTTACAACAGCAACTTCTTTCTGCAATCTACAAGACAACGAAAATAAAGATAGAAAACACTGAATCTGGAAAATCAATATTAGAGAGAAGACTTGGCCAGAAAAAGATACTTCTTGTCCTTGATGATGTGGACAGATTAGAGCAGCTAAATTTTTTAGCCGCAAGTCATAAATGGTTCTGTCCAGGGAGCACAATAATCATCACAACAAGAGATGAGCATCTTCTTCGTTGTCTTAGAGTTGATAAGTTGTATAGTATGAAAGAGTTAAATGACAATGAATCCATGGAACTTTTTAGCTGGCACGCATTCAAAGAACGACGTCCACAAAAAGAGTTTACTTTACTTGCTGATGAAGTTGTATCATATTGTGAGAGATTGCCACTCGCTCTTGAGGTGATTGGGTCCCATTTGTTTAACAGGAAAGAATATGAATGGAAGAGTGTTTTGAAGAAGCTCAGAACTATTCCAAACAATGATGTACAGAAGAAGCTTAAAATAAGTTTTGATGGTCTAAGTGATGATATGGATAGAGAAATATTTCTTGATGTGGCATTTTTCTTTATTGGAATGGACAAAAATGATGTAGTTGATATATTGAATGGGTGCGGGCATTCTGCTGAAATTGGAATAAATATTCTTATGGAACGATGCCTTATTACTGTGGACACCAAGAGGAAACTCAGCATGCATGGTTTGCTGCGAGACATGGGAAGAGAAATTATTCGCGAGAGTTTGCCAACGAAACCTGAAAAACGGAGTAGGTTGTGGAATCCAGAGGAAGTTCTTAATGTACTATCAGAAGACATGGGAACAAAAGCTATCAAGGGACTTGCTTTGAACTTGCCAAAGACATTGAATCCAACTAAGTTAAAGACTAGGGCATTTAAGGAGATGAAGAGACTCAGATTGCTTCAGTTTTCGAATGTGCAACTTGTTGGAGACTTTAAATATCTTTCAACTGATCTTCGATGGTTGTGCTGGCATGAATGTCCTTCAGAATATACAACTGCAAACTTTGATCAAAGAAATTTAGTTGCTATTGACTTCAAATATAGCAAACTTAAACTACTATGGAAGAATGGTCAGATGATGAAGAACCTAAAAATTCTCAATCTTAGTCATTCTCAACGCTTGACACAAACTCCTGACTTTTCAAATTTGCCCAATCTTGAAAAGTTAATACTCAAATATTGCCTAAAGTTGACTTCAGTTTCTCATACCATTGAACATCTCAAGCAAGTTCTTCTAATCAATTTCAAAGGGTGTTCAAGGCTTCGTGTACTTCCAAGAAGCATTTACAAGTTGAAGTCTCTCAAAACTCTTATTCTTTCAGGATGCTCATTGATTGATAAGTTAGAAGAGGACTTAGAACAGATGGAATCATTGACAACGTTGATGGTTGATAAAACTGCGATAACACAAGTGCCTCATGCACTACTAAGATTAAAGAGCATTGTGTATGTTTCTTTGTGCGACTTTGAAGGATTATCACGCAATGTGTTTCCTTCAATCATTTGGTCATGGTCCTCTCCAACAAATAATTTCTCACCCCAAGTTGAAACATTTTTGGACTCGTCAAATCTTGTTTCCTTAATAGTTCCCAATAGAAATTCTCAAGTCCTATCATCCATAATCAGAGGGCTTCCACAGGTCCAGAATGTTAGACTGGAATGTGGCTCACAACTTCAAATAACAGGAGATGTAGCTTCTGATACTCTTAATGTCACAAACTGCAATGAAATGATAGTAACATCAAGTGCATCAAATGTCTCAAGAGGAAGTACCTCATCATTAGCTGGGTTTTGCAACGAAGGTGACATTGTTGAATCAGAAAAATTCTTGAATTCATTTTTAATTCAAATGGGAACGAATTGTTCAGTTACAGAGGTACTTAGAGAGAATATTTTGCAGAAATTTAATGCCACAGTACCTGGAGATTCCTTGCTTCCTGGCAACAACAATCCTGATTGGTTAACATTCAGTGGTGAAGGTCCTTTTCTAATTTTTGACGTCCCTAACGTGAATGGGCGTAAGTTAAAGTCAGTGATGTTGTGTATTGTCTATTCTTCTTCCTCAAACATTGCACCATCAGAACAAGGCCCTATCATCAAAAACCTGTGTATCATAAATCACACAAAGACCACCCCTTTTCTCTATGATGGAGATACACTGGTTTCACTTAGTGATGAGGAATGGCAGAAAGTAATATCGAACCTTGAAGCTGGTGACAAAGTGCAGATTGTGGTTGCTTCTGGGTTAGGTTTCACTGTGAAGAAGACAGCAGTTTATCTCATATATGCAGGAGAAAATATGAATGTTCATGATGGAGGAGAAAATCATTTAAAAGATTTGAAGTCACATGGAAAACGAAAATTCATAGAGTATGATGATACCAAACATTGA 4758 0.38 MSYENQEPQSTFKPYRAMMCDVYISCQPQIPQTCILDLYDIGCEPHDPPHSLISDLCDALNHSGVYAFLDHTEPKTNDVFLSDAIEGSRVCIIVFTIDYAKSTLCLQELLKIMECRSSKGQRLVPVFYCLDPSEVYNLSGYFGKVFFDTLQRNSTDESKALTYSAALRDAAAISPMFLLDPWYKSKDIENIVEHVTSLLDSTDLFVAEHPVGIDWRVQDLIRLINDNQRSDDVLVISIWGMAGIGKTTIAKALYNQISHNFDVKKFVSNIKERIGLDGFFRVTLQEELRCFLWQKVKRKACNSDSTRDMWWEGLRRIKVLLVLDNVRSEKEPKVLPVALECFGPGSIIIITTRAKHDQLHEIGVNHIYRVKEMDYNECVELFSWSAFKKATPERSFSGLINYAIEFSDGLPLALVAVGSALSEKSIEEWDNVLDRLKRFPLQDVCQILKENIHSVGFEEKKMFLELAYLSHLFIGMDRNDVSQILQEAGRDAKAIKGLQDHSLVWFEEDKLCMHSLLQHIGREMYMKESSIDPQQRPYDIFLSFRGIETRSKFVSHLTASLENASFYVFKDENGLARGENISISLLKAIGESKTSVIILSPNYASSRWCLQELEDIMLCCKNRAQKVLPVFYHIEPSEVRNQTGEFGETFEILMERSEKIKRKEKSWRKALREVGCLSGFVVRKSSNESEDIKNIVEHVTHMLDMKKLFVANHPVGVESRVEEVIELLRDWQQENPVLLGIWGMGGSGKTTIAKAVYNKIFREFEGRCFLLNIREVWDQDNGILHLQQQLLSAIYKTTKIKIENTESGKSILERRLGQKKILLVLDDVDRLEQLNFLAASHKWFCPGSTIIITTRDEHLLRCLRVDKLYSMKELNDNESMELFSWHAFKERRPQKEFTLLADEVVSYCERLPLALEVIGSHLFNRKEYEWKSVLKKLRTIPNNDVQKKLKISFDGLSDDMDREIFLDVAFFFIGMDKNDVVDILNGCGHSAEIGINILMERCLITVDTKRKLSMHGLLRDMGREIIRESLPTKPEKRSRLWNPEEVLNVLSEDMGTKAIKGLALNLPKTLNPTKLKTRAFKEMKRLRLLQFSNVQLVGDFKYLSTDLRWLCWHECPSEYTTANFDQRNLVAIDFKYSKLKLLWKNGQMMKNLKILNLSHSQRLTQTPDFSNLPNLEKLILKYCLKLTSVSHTIEHLKQVLLINFKGCSRLRVLPRSIYKLKSLKTLILSGCSLIDKLEEDLEQMESLTTLMVDKTAITQVPHALLRLKSIVYVSLCDFEGLSRNVFPSIIWSWSSPTNNFSPQVETFLDSSNLVSLIVPNRNSQVLSSIIRGLPQVQNVRLECGSQLQITGDVASDTLNVTNCNEMIVTSSASNVSRGSTSSLAGFCNEGDIVESEKFLNSFLIQMGTNCSVTEVLRENILQKFNATVPGDSLLPGNNNPDWLTFSGEGPFLIFDVPNVNGRKLKSVMLCIVYSSSSNIAPSEQGPIIKNLCIINHTKTTPFLYDGDTLVSLSDEEWQKVISNLEAGDKVQIVVASGLGFTVKKTAVYLIYAGENMNVHDGGENHLKDLKSHGKRKFIEYDDTKH 1585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc92353g00001 1585 Gene3D Ribonuclease Inhibitor 1059 1279 IPR032675 -
Stsc92353g00001 1585 ProSiteProfiles TIR domain profile. 536 703 IPR000157 GO:0007165
Stsc92353g00001 1585 FunFam Disease resistance protein (TIR-NBS-LRR class) 534 705 - -
Stsc92353g00001 1585 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 538 1366 IPR044974 GO:0006952
Stsc92353g00001 1585 Gene3D - 203 361 IPR027417 -
Stsc92353g00001 1585 SMART till_3 19 173 IPR000157 GO:0007165
Stsc92353g00001 1585 SMART till_3 537 677 IPR000157 GO:0007165
Stsc92353g00001 1585 SMART AAA_5 735 863 IPR003593 GO:0016887
Stsc92353g00001 1585 SMART AAA_5 232 378 IPR003593 GO:0016887
Stsc92353g00001 1585 SUPERFAMILY Toll/Interleukin receptor TIR domain 49 149 IPR035897 -
Stsc92353g00001 1585 Pfam TIR domain 538 701 IPR000157 GO:0007165
Stsc92353g00001 1585 Pfam TIR domain 50 195 IPR000157 GO:0007165
Stsc92353g00001 1585 Gene3D - 535 704 IPR035897 -
Stsc92353g00001 1585 Gene3D - 43 202 IPR035897 -
Stsc92353g00001 1585 SUPERFAMILY L domain-like 1075 1344 - -
Stsc92353g00001 1585 Gene3D - 373 458 IPR042197 -
Stsc92353g00001 1585 Gene3D - 873 957 IPR042197 -
Stsc92353g00001 1585 SUPERFAMILY Toll/Interleukin receptor TIR domain 529 679 IPR035897 -
Stsc92353g00001 1585 Pfam NB-ARC domain 718 947 IPR002182 GO:0043531
Stsc92353g00001 1585 Pfam NB-ARC domain 228 453 IPR002182 GO:0043531
Stsc92353g00001 1585 SUPERFAMILY "Winged helix" DNA-binding domain 944 1050 IPR036390 -
Stsc92353g00001 1585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 465 IPR027417 -
Stsc92353g00001 1585 Gene3D - 705 868 IPR027417 -
Stsc92353g00001 1585 PRINTS Disease resistance protein signature 738 753 - -
Stsc92353g00001 1585 PRINTS Disease resistance protein signature 815 829 - -
Stsc92353g00001 1585 PRINTS Disease resistance protein signature 1218 1234 - -
Stsc92353g00001 1585 PRINTS Disease resistance protein signature 908 922 - -
Stsc92353g00001 1585 ProSiteProfiles TIR domain profile. 34 195 IPR000157 GO:0007165
Stsc92353g00001 1585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 703 967 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc92353g00001 Stsc-Chr92353 1850 10854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc92353g00001 52 536 WRKY Transcription Factor Family AT4G12020 26.113 3.37e-28 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc92353g00001 - - ahf:112749517 2070.43